Strains and Chemicals
All stains were routinely maintained on yeast peptone dextrose (YPD) broth or agar. Sabouraud dextrose broth (SDB), YPD, and RPMI-1640 (Rosewell Park Memorial Institute) buffered with MOPS (pH-7.0) were used in the experiments. In general, cells were grown at 37°C or as mentioned otherwise. The chemicals, drugs and all the media components were procured from Himedia, and SRL, India. The stock solution drugs were prepared in dimethyl sulfoxide (DMSO). Wild type strain of C. albicans (SC5314) was procured from CSIR-Institute of Microbial Technology (IMTECH), Chandigarh, India. Four C. albicans clinical isolates of invasive candidiasis (CCA1-CCA4) were previously described elsewhere (Gupta et al., 2016).
Antifungal susceptibility test
CLSI guidelines were followed for yeast broth microdilution assay to obtain growth inhibitory and fungicidal concentrations of AXD and HCP against C. albicans and clinical isolates in 96 well MTP (Gupta & Poluri, 2022). Briefly, log phase cells were diluted to adjust the cell density of 2.5 × 103 cells/ml in RPMI-1640, were exposed to different concentrations of drugs ranging 0.1–0.6 µg/ml for AXD, and 2–25 µg/ml for HCP. The MTP was incubated at 37°C for 48 h. The fungicidal concentration of drug was determined by spotting 5 µl of drug treated cultures on YPD agar plates followed by incubation of the agar plates for 18 h at 37°C before being photographed. Dose points of no growth were considered as MFC.
Time kill assay
For determining the time dependent effects of different doses of the drugs, time kill assay was performed against wild type strain (Priya et al., 2021). Briefly, log phase cells were exposed to MIC50, 2× MIC50, 4× MIC50 concentrations of drugs upto 5 h in YPD broth in different tubes. Average MIC50 doses were used i.e. 0.3 µg/ml and 9 µg/ml for AXD and HCP, respectively. Afterwards, 5 µL of cells suspension from each tube was spotted onto YPD agar plate after different exposures (0, 1, 2, 3, 4, 5 h). The images of plates were taken after 18-hour incubation period at 37°C.
Growth kinetics
The growth kinetics of C. albicans and its clinical isolates in the presence and absence of AXD and HCP by growing them in YPD broth at 37°C (Nordin et al., 2013). Briefly, log phase cells were exposed to average MIC50 doses of AXD and HCP (0.3 µg/ml and 9 µg/ml, respectively for the reference strain) followed by measuring OD600nm for 7 h with an interval of 1 h through UV-Vis spectrophotometer (Agilent). Sub lethal doses of AXD and HCP were used in growth kinetic studies.
Ergosterol content
Cell membrane ergosterol content of planktonic cells of wild type and clinical isolates of C. albicans were estimated after exposing them to MIC50 of AXD (0.3 µg/ml) and HCP (9 µg/ml) for 24 h at 37°C (Gupta, Gupta, and Poluri 2021; De Oliveira Pereira, Mendes, and De Oliveira Lima 2013). After the drug treatment in SDB, cells were centrifuged washed with sterile water. Wet weight of pellet was estimated followed by resuspending in lysing solution (25% alcoholic KOH) and vigorous vertexing. The sterols were extracted by mixing water and n- heptane in 1:3 ratio. The organic layer of n- heptane was carefully pipetted out and mixed with absolute ethanol, and scanned using spectrophotometer in the range of 230–300 nm. Percentage ergosterol was calculated using following formula.
\(\varvec{\%}ERG=\frac{\left[\left(\frac{A281}{290}\right)\times F\right]}{pellet weight}-\frac{\left[\left(\frac{A230}{518}\right)\times F\right]}{pellet weight}\) (Eq. 1)
Cell surface hydrophobicity
Log phase cells of overnight grown cultures were diluted to OD600nm 0.1 and were exposed to minimum inhibitory concentration of the drugs followed by incubation for 24 h at 37°C (AXD: 0.3 µg/ml; HCP: 9 µg/ml) (Gupta et al., 2022). Cells were harvested and washed followed by cell suspension preparation in 3ml sodium phosphate buffer. Octane was then added to this suspension and vortexed for 1 min. After carefully extracting the aqueous phase, the absorbance at 600 nm was used to quantify the cells that were present in the aqueous layer using spectrophotometry. the hydrophobicity index was determined by using the following equation
\(\text{H}\text{I}=\frac{A1-A2}{A1}\times 100\%\) (Eq. 2)
where A1 is the absorbance of initial inoculum and A2 is the absorbance of aqueous phase. CSH index of wild type strain as well as selected isolates were analyzed in absence of the drugs with the controls.
Germ tube formation assay
Effect of the drugs on germ tube formation (yeast to hyphae transition) was studied in wild type strain (CA) and selected clinical isolates (CCA2 and CCA4) following a previous study (Bernardes et al., 2012). Briefly, overnight cultures of all strains were diluted in YPD broth (OD600nm ranging 0.2–0.4) with and without 10% fetal calf serum in presence and absence of drugs at MIC50 doses of reference strain (CA) i.e. 0.3 µg/ml and 9 µg/ml for AXD and HCP, respectively. All tubes were incubated at 37°C with shaking for 4 h. Cultures were examined and photographed microscopically after nigrosine staining at 40X in light microscope (Olympus).
Adhesion assay
Effect of the drug on adhesion of C. albicans and its clinical isolates was studied in 96-well flat bottom MTP (Raut et al., 2013). Briefly, phosphate buffered saline (PBS) of pH 7.0 was used to dilute log phase cultures of the stains to a concentration of 1× 107 cells ml-1. Fifty microliters of cell suspension were added to each well following the addition of 50 µl of drug dilutions in PBS (AXD: 1–10 µg/ml & HCP 1–12 µg/ml). Control well was kept without drug. The plate was incubated at 37°C for 90 min at 100 rpm. Afterward, wells were washed with sterile PBS, and adhered cells were quantified using XTT reduction assay by measuring OD at 492nm.
Biofilm formation assay
Effects of the drugs on biofilm formation were analyzed on flat bottom MTP followed by XTT reduction assay (Gupta et al., 2018). Briefly, log phase cells were diluted to density of 1× 107 cells ml-1 in PBS, and 100 µl of cell suspension was added to each well followed by incubation for 90 min at 37°C. After washing with PBS, 200 µl drug dilutions in RPMI were added to different wells (AXD: 1–8 µg/ml & HCP: 1–14 µg/ml) with a control sample without any drug. The MTP was incubated at 37°C for 48 h. After the incubation, wells were washed with sterile PBS, and the developed biofilm was quantified using XTT reduction assay by measuring OD at 492nm.
Biofilm eradication assay
Biofilm eradication effects of AXD and HCP were studied by seeding and maturing biofilm for 24 h as mentioned above (Gupta et al., 2018). After the incubation, the biofilm was washed twice with sterile PBS followed by addition of drug dilutions in RPMI (AXD: 1–8 µg/ml & HCP: 1–16 µg/ml). Control sample was kept without any drug and plate was again incubated for another 24 h at 37°C followed by quantification using XTT reduction assay by measuring OD at 492nm.
Biochemical composition of extra cellular matrix (ECM) of biofilm
ECM is a gelling material of cells and other components of biofilm. The biochemical composition of ECM of the wild type C. albicans was determined in presence of sub-lethal concentrations of the drugs (Gupta et al., 2018). Briefly, C. albicans biofilm were developed in the presence AXD (6 µg/ml) and HCP (8 µg/ml). After drug treatment for 24 h, the biofilm was scrapped out from MTP using a sterile scrapper and PBS (pH 7.0). ECM from the biofilm was isolated by sonicating (GT-Sonic D9) at 35W in an ice bath for five cycles of 30 seconds each. The ECM suspension was centrifuged at high speed to separate out pellet and supernatant. The supernatant with ECM components was examined for biochemical and enzymatic assays including total carbohydrate, protein, eDNA, proteinase, phospholipase, and SOD activity whereas cell pellet was employed for catalase activity measurement.
Carbohydrate, protein and eDNA
Total carbohydrate was estimated by phenol-sulfuric acid method using glucose as a standard. Briefly, 100 µL of supernatant was mixed with 1 ml of sulfuric acid and 200 µL of phenol (5% w/v) in glass tubes followed by incubating at 30°C for 30 min. The tubes were then cooled down and the absorbance was taken at 485 nm.
Total protein was measured using Bradford regent, and bovine serum albumin as standard. The samples were incubated for five min in dark for color development. After the incubation, absorbance of samples was measured at 595 nm.
Total eDNA in samples was quantified by precipitating it by adding one-tenth the volume of sodium acetate (3M) in sample followed by the addition of phenol, chloroform and isoamyl alcohol (25:24:1). The aqueous layer was transferred to fresh tube and 2.5 volume of absolute ethanol was added. The purity of precipitated eDNA was measured using Nanodrop at 260/280 ratio.
Tissue invading enzyme activity
Phospholipase activity in ECM was measured as described in previous study (Gupta et al., n.d.). Briefly, substrate was prepared which consisted of 50 mM Tris-HCL buffer (pH 7.5), 0.25% Triton X-100, 1.6 mM phosphatidylcholine, 20 mM AlCl3 and 0.124% bromothymol blue followed by filtration and storage of solution at 4°C. For the determination of phospholipase activities, 100 µL of sample was mixed with 900 µL of substrate (pH 7.5) followed by measuring absorbance at 630 nm. The specific phospholipase activity was documented as the absorbance shift per min of the reaction.
For the proteinase activity determination, 1% w/v azocasein substrate was mixed with the supernatant and the sample solution was incubated for 1 h at 37°C. After the incubation, 10% trichloroacetic acid was used to terminate the reaction. The mixture was centrifuged at high speed for 5 min. The obtained supernatant was mixed with 0.5 M NaOH and again incubated for 15 min followed by absorbance measurement at 440 nm. The amount of proteinase activity is defined as the amount of enzyme that caused the absorbance to rise by 0.001 units per minute during the process.
ROS & Antioxidant enzyme activity
Mitochondrial reactive oxygen species
Effect of sub-lethal concentrations of AXD (6 µg/ml) and HCP (8 µg/ml) on reactive oxygen species (ROS) level was studied in cells of C. albicans biofilm. For ROS estimation, DCFDA (10 µM) was added into black well multi well plate (MTP) and incubated at 37°C for 30 min in dark (Gupta et al., n.d.). The fluorescence of DCFDA was documented at the emission and excitation wavelength of 520 nm and 485 nm, respectively (BIOTEK, Agilent).
Catalase activity
For the determination of catalase activity, cell free extract was prepared as mentioned in (Jethwaney et al., n.d.). Glass beads were used for lysing the drug treated C. albicans sessile cells which were collected after ECM isolation and followed by centrifugation at 10,000 rpm. The supernatant obtained was transfer to fresh tube and was used for determining catalase activity. Briefly, 333 µL of 50 mM H2O2 and 567 µL of PBS (pH 7.0) was mixed with 100 µL of supernatant flowed by absorbance measurement at 240 nm. One unit catalase activity is the amount of enzyme that decompose 1 µM of H2O2 per min of reaction at 37°C (Gupta et al., 2018). Following formula was employed for calculating the catalase activity (U/mg)
\(\frac{\text{U}}{\text{m}\text{g}}=\frac{(\text{A}0-\text{A}2)\times \text{V}\text{t}}{\sum 240 \times d\times Vs\times Ct\times 0.001}\) (Eq. 3)
A0-A2 is the difference in absorbance; Vt is total volume of sample; 240 is the molar coefficient of H2O2; d is optical pathlength of cuvette; Ct is the protein concentration in sample
Superoxide dismutase activity
SOD is an antioxidant enzyme which elevates during ROS or free radical generation. SOD activity was determined in the ECM upon exposure to the drugs (Gupta et al., 2022). The intracellular (cell free) extract was mixed with 2 mM EDTA, 55 µM nitroblue tetrazolium, 9.9 mM L-methionine, 1 µM riboflavin, 0.025% Triton ×100 and 50 mM PBS to final volume of 200 µl. The plate was incubated in light as well as in dark for 10 min at room temperature. The U/mg SOD is the amount of protein required to prevent the reduction of NTB by 50%.
FESEM analysis
Morphological changes in wild type C. albicans biofilm cells upon the exposure to sublethal concentrations of AXD (6 µg/ml) and HCP (8 µg/ml), were analyzed using FESEM as per the previous study (Gupta & Poluri, 2022). Briefly, small pieces of polystyrene discs (1 cm2) were preconditioned and 1mL of cell suspension was added onto it after placing in 24 well plate and incubated for 48 h. Media containing sub lethal dose of AXD and HCP was added after 48 hours and again incubated for 24 h at 37°C. The disc was fixed overnight in 2.5% glutaraldehyde, and dehydrated. The air-dried discs were mounted on stubs followed by gold sputtering. Finally, the images were captured using FESEM at magnification ranging from 1000X to 5000X and voltage of 15kV.
Statistical analysis
Mean of three values of OD600 nm along with standard deviation is represented in each assay of this study. The significant differences between the values of antifungal activities of drug was analyzed using student’s t-test with P value < 0.05 was considered as significant.