Due to the different composition of the two mediums, the time for the growth of a single scattered colony was also different. The growth rate (2 days) of bacteria cultured in R2A medium was significantly faster than that (4 days) cultured in TSA medium. In total, 184 bacteria were isolated from the soil of five F. luteovirens fairy rings on TSA and R2A media. During the identification of the isolates we found that the relationship of the concentration of bacterial DNA with the PCR strip conditionand and the sequencing results (Table 2). The concentration of DNA should be over 30 ng/uL, the result of PCR and sequencing may be ideal. From 184 bacterial, 20 strains was identified. Most of the bacteria were only can cultured at TSA or R2A medium, only Bacillus cereus, Bacillaceae bacterium can be cultured at both (Table 3). Then, isolates were clustered into 20 mOTUs using partial sequence analysis based on 16S rDNA sequences. Then, phylogenetic tree shows 12 species belonging to three phyla, four classes, seven orders, 10 families, and 10 genera (Fig. 1). Proteobacteria (66.16%) is the most dominant phylum, followed by Firmicutes (31.45%). At the genus level, Bacillus (28.65%) is the most dominant one followed by Achromobacter (27.53%) (Fig. 2a). At the species level, we isolated 47 Achromobacter spanius strains and 40 Bacillus cereus strains which were the dominant species in our study. Moreover, different mediums performed differently in the isolation of fairy ring soil bacteria. Eight strains (Bacillus, Acinetobacter, Stenotrophomonas, Microbacterium, Brevibacterium, Pseudomonas, Cupriavidus, Leuconostoc) were found rom 97 TSA isolates, and by contrast, only four strains (Bacillus, Pseudomonas, Achromobacter, paenarthrobacter) were unique from 87 R2A isolates (Fig. 2b). The brilliant identified 20 bacteria (the bold) were to conduct the following study (Table 3).
Table 2
The relationship of the concentration of bacterial DNA with the PCR strip conditionand and the sequencing results.
Bacterial concentration (ng/uL) | Sample size | PCR strip condition | The sequencing results |
0 ~ 10 | 21 | Not good | None |
10 ~ 20 | 25 | Good | Most of ideal |
20 ~ 30 | 13 | Good | Some of not ideal |
30 ~ 605 | 224 | Good | Ideal |
Table 3
Identification of bacteria from the soil of five F. luteovirens fairy rings on TSA and R2A media
Bacteria number | Identification of bacteria | Bacteria number |
| Arthrobacter spanius | 1–2、1–30 |
| Acinetobacter rhizosphaerae | 1–1、1–5、2–19、2–20、2–21、2–22、2–23、2–25、2–26、2–28、2–35、2–36、2–65、2–81、2–82、2–84 |
| Achromobacter sp. | A1、A9、A12、A13、A18、A19、A23、A24、A26、A28、A29、A30、A37、A38、A39、A40、A41、A42、A48、A49、A51、A52、A53、A54、A55、A56、A58、A59、A60、A61、A63、A64、A65、A66、A67、A69、A75、A76、A77、A78、A79、A82、A83、A84、A87、A88、A91、A81、A89 |
| Bacillus cereus | A14、1–34、2–24 |
1–31 | Bacillus sp. | |
| Bacillus thuringiensis | A70、2–73、A43、A71、1–3、1–17、1–19、1–20、1–22、1–25、1–27、1–29、1–38、1–39、1–40、1–41、1–42、1–43、1–44、1–45、2–2、2–6、2–7、2–13、2–14、2–15、2–18、2–34、2–37、2–38、2–3、2–40、2–41、2–43、2–46、2–47、2–61、2–66、2–68、2–70、2–80、2–87、2–45、2–76 |
| Bacillaceae bacterium | A21、A57、A85、2–85 |
1–21 | Brevibacterium frigoritolerans | |
2–94 | Cupriavidus respiraculi | |
2–58 | Leuconostoc sp. | |
| Microbacterium sp. | 1–4、1–26、1–28、1–35、2–74 |
1–6 | Microbacterium oxydans | |
A6 | Pseudomonas fluorescens | |
| Pseudomonas koreensis | A16、A27、A34、A35、A47、A72、A74、A5、A10、A11、A15、A25、A32、A80 |
A17 | Pseudomonas moraviensis | |
| Pseudomonas reinekei | 2–49、2–50 |
| Pseudomonas sp. | A2、A3、A4、A8、A22、A62、A90 |
| Stenotrophomonas rhizophila | 1–10、2–29、2–62、2–69、2–90 |
| Stenotrophomonas sp. | 1–7、1–8、1–11、1–12、1–14、1–15、1–16、1–18、2–10 |
1–33 | Uncultured bacterium | |
The F. luteovirens mycelium started germinating at the 10th day, overgrowed with the test-tube about 22 ~ 24th day at 25 ℃. Then, the white and sparse hypha could be used to conduct the following study for its brilliant quality. For bacteria-fungus co-culture experiments, 10 strains fairy ring bacteria significantly promoted the growth of F. luteovirens on PDA medium, accounted for half of culturable strains. These bacteria were identified as Achromobacter marplatensis (A89), Leuconostoc pseudomesenteroides (2–58), Acinetobacter rhizosphaerae (1–5), Microbacterium oxydans (1–28), Stenotrophomonas rhizophila (2–62), Pseudomonas fluorescens(A6), Cupriavidus respiraculi (2–94), Stenotrophomonas sp. (1–12), Bacillus cereus (A14),Bacillus thuringiensis (2–85). Meanwhile, we found 6 strains Bacillus thuringiensis (A70), Pseudomonas reinekei (2–49), Arthrobacter spanius (1–2), Uncultured bacterium (1–33), Pseudomonas koreensis (A11), Pseudomonas sp. (A4) fairy ring bacteria did not have any effect on the growth of F. luteovirens on PDA medium, however, 4 strains fairy ring bacteria Microbacterium oxydans (1–6), Bacillus sp. (1–31), Pseudomonas moraviensis (A17), Brevibacterium frigoritolerans (1–21) was suprised to have the inhibiting effect (Table 4). Although there is still 3 strains of the bacteria had the inhabitating effect on F. luteovirens mycelium, but the multiple of hypha detrimental bacteria was only 2.99% of all the multiple of bacteria, most of the the bacteria was hypha helper bacteria (64.18%) (Fig. 3a).
Table 4
Initial screening of MHB independent sample t test results
Bacteria number | The first comparison results | The second comparison results | The third comparison results | Final comparison results |
A89 | ་ | ་ | ་ | ་ |
A70 | 0 | 0 | 0 | 0 |
1–6 | - | - | 0 | - |
2–58 | ་ | ་ | ་ | ་ |
2–49 | 0 | 0 | 0 | 0 |
1–2 | 0 | 0 | 0 | 0 |
1–5 | ་ | ་ | ་ | ་ |
1–28 | ་ | ་ | ་ | ་ |
1–31 | - | - | 0 | - |
1–33 | 0 | 0 | 0 | 0 |
2–62 | ་ | ་ | ་ | ་ |
A6 | ་ | ་ | 0 | ་ |
2–94 | ་ | ་ | - | ་ |
A11 | 0 | 0 | 0 | 0 |
1–12 | ་ | ་ | ་ | ་ |
A4 | 0 | 0 | 0 | 0 |
A17 | - | - | - | - |
A14 | ་ | ་ | ་ | ་ |
1–21 | - | - | - | - |
2–85 | ་ | ་ | 0 | ་ |
We constructed the mycorrhizal symbiosis between T. epens and F. luteovirens and then tested the symbiosis promoting ability of 12 potential MHBs (ten strains from the present study and two strains from our previous study). From the Staining and microscopic examination results, the discolored mycorrhiza root structure can be clearly seen, the red arrow pointed to the hypha penetrated into the root, the distinct septum and protuberant structure of the hypha was seen clearly. The blue arrow pointed to the spores of the F. luteovirens, and the blue arrow pointed to the Hartig-net of the ectomycorrhiza, hence the mycorrhizal symbiosis between T. epens and F. luteovirens was successfully constructed (Fig. 4). Ultimately, we got 4 strains MHB Achromobacter marplatensis (A89), Stenotrophomonas rhizophila (2–62), Bacillus cereus (A14), Pseudomonas fluorescens(A6) to stimulate the formation of mycorrhizal symbiosis between T. epens and F. luteovirens, the infection rate increased respectively 8.2%、9.0%、22.1%、37.4%, the highest infection effect can reach 90.3%. However, we also got four strains bacteriac Leuconostoc pseudomesenteroides (2–58), Acinetobacter rhizosphaerae (1–5), Cupriavidus respiraculi (2–94), Bacillus thuringiensis (2–85) inhibited the inoculum rate of F. luteovirens to the roots (Fig. 3b).