Patients and tissue samples
This study included sixty-two patients with PC who were pathologically diagnosed between 2016 and 2023 and who underwent pancreatectomy at the Department of Hepatobiliary Surgery of the Second Affiliated Hospital of Nanchang University. The specimens were subjected to immunohistochemical analysis after being embedded in formalin and paraffin. The patients' clinicopathological data were also collected. All patients provided informed consent. Tumor staging was determined according to the Union for International Cancer Control TNM classification guide (8th edition, 2019). The Ethics Committee of the Second Affiliated Hospital approved the study.
Cell lines
PANC-1, SW-1990, BXPC-3, ASPC-1, and H6C7 (human normal pancreatic ductal epithelial cells) cells were purchased from the Institutes for Life Sciences, Chinese Academy of Sciences (Beijing, China). All cells were cultured in DMEM (Thermo Fisher, 12430054, USA) supplemented with 10% fetal bovine serum (FBS, HyClone, SH30396.02, USA), except for the ASPC-1 cells, which were cultured in RPMI-1640 medium (Thermo Fisher, 11875119, USA) supplemented with 10% FBS in a humidified incubator supplemented with 5% carbon dioxide at 37°C, and the medium was changed every 3 days.
Immunohistochemistry
Tissue specimens were dewaxed in xylene and rehydrated in a graded series of ethanol. Afterwards, the tissue sections were placed in a pressure cooker at 100°C for 15 minutes to repair the antigens. Subsequently, the sections were incubated with H2O2 for 15 minutes at room temperature to block endogenous peroxidase activity. Next, the sections were blocked with goat serum (Thermo Fisher, 16210064, USA) for 30 minutes. Next, the sections were incubated with an anti-KIFC1 antibody (1:200, ORIGENE, TA38608) at 4°C overnight. Afterwards, the sections were incubated with the corresponding secondary antibodies. Both the staining intensity and area of positive staining for KIFC1 were evaluated by two pathologists in a mutually blinded manner. Staining was graded as 0 (negative), 1 (weakly positive), 2 (moderate) or 3 (strongly positive) based on the intensity of staining. The extent of staining was scored as 1 (< 10%), 2 (10–40%), 3 (40%-75%) or 4 (> 75%). The intensity and extent of the staining were multiplied to obtain a total staining score. The KIFC1 score ranged from 0 to 12, which allowed the specimens to be categorized into a low-expression group (0–3) and a high-expression group (3–12).
Data mining and bioinformatics analysis
The expression profiles of KIFC1 and BUB1 in PC and their respective survival curves were obtained from the Gene Expression Profiling Interactive Analysis (GEPIA) online database (http://gepia.cancer-pku.cn/). KIFC1 and BUB1 gene correlation analyses were performed with the Gene_Corr module of the TIMER2.0 database (http://timer.cistrome.org/). The PPIs were first identified from the STRING database and then mapped using Cytoscape v3.9.0 software. The GSE107160, GSE16515 and GSE15471 datasets were obtained from the GEO database (https://www.ncbi.nlm.nih.gov/geo/).
Cell transfection
Small interfering RNA (siRNA) targeting KIFC1 and lentiviruses for the knockdown or overexpression of KIFC1 and BUB1 were purchased from General Biol (Anhui, China). Small interfering RNA (siRNA) was used to grow the cells in 6-well plates to 70–80% confluence, and the cells were transfected with Lipofectamine 2000 (Invitrogen, 11668-019, USA) according to the manufacturer's protocol. After the cells reached 90% confluence, they were infected with lentivirus, followed by screening with puromycin to obtain stable overexpression and knockdown cell lines. The sequences of the siRNAs used were as follows: siRNA1: 5'-GGACUUAAAGGGUCAGUUATT-3' and siRNA2: 5'-CGGGAACGCCUUCGGGAAATT-3'.
Quantitative real-time PCR (qRT‒PCR)
The expression of KIFC1 was assessed by qRT‒PCR. Total RNA was isolated from PC cells using TRIzol reagent, and cDNA was obtained by reverse transcription according to the instructions of TRAN One-Step gDNA Removal and cDNA Synthesis SuperMix Kits (TransGen, AE311, China). qRT‒PCR was subsequently performed using SYBR® Premix Ex Taq II Kits (Takara, RR420B, USA). The 2−ΔΔCt method was used to calculate KIFC1 using GAPDH as an internal reference[25] for relative expression. The sequences of the primers used were as follows: KIFC1-F: 5'-GCAGGAACTCAAGGGCAA-3', KIFC1-R 5'-GCTAAGGCGGGGTTGGAG-3'; and GAPDH-F: 5'-GGACCTGACCTGCCGTCTAG-3', GAPDH-R 5'-GTAGCCCAGGATGCCCTTGA-3'.
Western blotting
Cell or tissue samples were lysed using RIPA lysis buffer supplemented with protease inhibitors. The proteins were separated by SDS‒PAGE using either an 8% or 10% gel and then transferred to 0.22 \(\:\mu\:m\) PVDF membranes (Millipore, ISEQ00010, USA). The membranes were blocked with 5% skim milk and incubated with primary antibodies overnight at 4°C. The strips were then washed with TBST and incubated with secondary antibodies for one hour at room temperature. Finally, the strips were visualized using a bioimaging system and analyzed with ImageJ software.
Primary antibodies against KIFC1 (cat. no. TA384608, ORIGENE), BUB1 (cat. no. HA60053, HUABIO), β-catenin (cat. no. #8480, Celling Signaling), TCF-4 (cat. no. #2569, Celling Signaling), c-Myc (cat. no. #9402, Celling Signaling), cyclin D1 (cat. no. #55506, Celling Signaling), N-cadherin (cat. no. #13116, Celling Signaling), E-cadherin (cat. no. #3195, Celling Signaling), vimentin (cat. no. #5741, Celling Signaling), and GAPDH (cat. no. #5174, Celling Signaling) were used.
Cell Counting Kit-8
The transfected cells were inoculated into 96-well plates at a density of 4000 cells per well and cultured for 24, 48, or 72 hours. Then, 10 \(\:\mu\:L\:\)of CCK-8 (Abcam, ab228554, USA) reagent was added to each well at the end of each incubation cycle. After a 2-hour incubation, the absorbance of each well at 450\(\:\:nm\:\)was measured using a microplate reader.
Colony Formation Assay
Cells that had been transfected and resuspended were inoculated into six-well plates at a density of 800 cells per well. The cells were cultured for 14 days, and the cells in each well were fixed with paraformaldehyde for 30 minutes at room temperature and then stained with crystal violet for 10 minutes. A microscope was used to count the number of cell clusters.
Cell proliferation assay
Cell proliferation was assessed by a 5-ethynyl-2ʹdeoxyuridine (EdU) proliferation assay, and an EdU kit (UElandy, C6044S, China) was purchased from UElandy Biotechnology Co. in Suzhou, China. Transfected and resuspended cells were inoculated into 96-well plates at 1 × 105 cells per well. Once the cells had attached to the wall, the EdU reagent was added to the medium, and the cells were incubated for two hours. After this, the cells were fixed with 4% paraformaldehyde and destained with glycine, and the cell membrane was permeabilized with 0.5% Triton X-100. YF594 or YF488 was added for 30 minutes at 25°C in the dark. After washing, Hoechst 33342 was added for another 30 minutes under the same conditions. Images were acquired using a fluorescence microscope.
Wound healing
The fused cells were treated with mitomycin (1\(\:\:\mu\:g/mL\)) for one hour after being switched to serum-free medium. Vertical scratches were made at the bottom using a 200 \(\:\mu\:l\:\)pipette gun tip. The shed cells were washed away with PBS, and the scratches were imaged at 0 h. Images were captured again 24 h after incubation, and the rate of cell migration was calculated.
Transwell assay
For the invasion assay, Matrigel was spread into Transwell chambers. Transfected cells were then resuspended in serum-free DMEM and added to the upper chambers, while DMEM containing 10% FBS was added to the lower chambers. The chambers were incubated for 48 hours in a 24-well plate. After incubation, the chambers were fixed with 4% paraformaldehyde for 25 minutes and stained with crystal violet for 5 minutes. Images were captured using a microscope, and the cells were counted.
Cell Cycle Assay
A total of 1×105 posttransfection cells were collected and fixed with precooled 70% ethanol in a refrigerator at 4°C overnight. The following day, the cells were washed twice with PBS, stained with 0.5 ml of PI/RNase (Abcam, ab112116, USA) and resuspended. The cells were incubated for 30 minutes at room temperature in the dark. Afterward, the cell cycle distribution was analyzed using flow cytometry.
Animal Experiments
Female BALB/c nude mice (6–8 weeks old) weighing 15 ± 1 g from Beijing SPF Biotechnology Co., Ltd., were used to construct a xenograft tumor model. All animal experiments were conducted at Nanchang Royo Biotech Co,. Ltd. The aim of this study was to investigate the effect of KIFC1 on tumor formation in vivo.
The mice were injected subcutaneously with 1×106 PANC-1 cells (with stable KIFC1 knockdown) resuspended in 100\(\:\:\mu\:L\:\)of serum-free DMEM. Tumor volumes were measured at five-day intervals, and images of the mice were captured after 30 days using a small animal live imager. After the mice were euthanized, the tumor tissue was removed for detection. All animal experiments were approved by the Institutional Animal Care and Use Committee of Nanchang Royo Biotech Co,. Ltd (Nanchang, China, IACUC No. RYE2024033001)
Statistical analysis
All analyses were performed using SPSS 26.0 software. Survival curves were plotted using the Kaplan‒Meier method and compared using the log-rank test, and the association between KIFC1 and clinicopathology was tested using the \(\:\chi\:2\) test. Bivariate correlations were calculated using Pearson's correlation coefficient. Comparisons between two groups were made using two independent samples t tests, and differences were considered statistically significant at P < 0.05. The data are presented as the means ± SDs, and P < 0.05 was considered to indicate statistical significance.