To the best of our knowledge, this study represents an inaugural exploration of the association between CAN, assessed using the coefficient of CVRR, and clinicopathological outcomes in non-diabetic patients with CKD. Multivariate analyses confirmed that the relationship between CAN and IF/TA persisted even after adjusting for established risk factors for CAN, including sex, age, hypertension, smoking habits, proteinuria, triglycerides and eGFR. These findings underscore the significant interconnection between CAN and tubulointerstitial damage in the renal pathology of non-diabetic patients with CKD. A reduction in the CVRR is indicative of parasympathetic autonomic dysfunction, which subsequently progresses to sympathetic dysfunction [20, 21]. Furthermore, a diminished CVRR may reflect sympathetic hyperactivity. Although the detailed pathophysiology linking CKD and sympathetic overactivity remains underexplored, numerous studies have documented elevated sympathetic nerve activity (SNA) in patients with CKD [22]. Notably, plasma norepinephrine levels, a critical neurotransmitter of the sympathetic nervous system, are significantly increased in patients with CKD having deteriorating kidney function [23]. Additionally, investigations into muscle SNA (MSNA) in patients with CKD revealed that resting MSNA is heightened in the early stages of CKD and escalates as the disease progresses [24]. Our findings also suggest a trend towards declining kidney function in patients with CAN, highlighting a potential intricate linkage between CAN and CKD progression. Crucially, the histopathological evaluations in this study revealed that IF/TA correlated with reduced CVRR, independent of kidney function. Previous investigations have linked IF/TA in patients with CKD to disturbances in the circadian rhythm. Haruhara et al. [14] identified an association between IF/TA and abnormalities in circadian blood pressure patterns. Oba et al. [13] observed that IF/TA correlates with non-dipping pulse rates. These findings suggest that sympathetic hyperactivity, which underlies circadian rhythm disturbances, is associated with IF/TA, potentially corroborating our observations regarding the relationship between IF/TA and CAN. We propose a deleterious cycle between CKD and CAN mediated by two primary mechanisms: The first involves hyperactivity of the renin–angiotensin system (RAS), where elevated urinary angiotensinogen levels are associated with the severity of IF/TA. Activation of RAS increases intraglomerular pressure, thereby exacerbating kidney injury and sympathetic overactivity [25]. The second mechanism involves the activation of the afferent sympathetic nerves. Animal and human studies have demonstrated that renal-derived neural signals amplify sympathetic outflow in CKD [26]. Kidney dysfunction results from IF/TA-induced stimulation of the afferent autonomic pathways. Experimental animal studies have shown that the activation of renal afferent nerves enhances the activity of efferent sympathetic nerves, which release norepinephrine. Furthermore, animal model research has revealed that norepinephrine contributes to IF/TA by promoting apoptosis and secretion of profibrotic factors, thereby facilitating the transformation of fibroblasts into myofibroblasts in tubular epithelial cells [27]. This study has several limitations. First, it was not possible to infer causality between CAN and IF/TA owing to its cross-sectional design. Second, the cohort comprised patients with CKD who underwent kidney biopsy, which might not be representative of the general CKD population, potentially introducing a selection bias. Third, the limited sample size precluded detailed disease-specific analyses based on kidney biopsy diagnoses. Lastly, while various diagnostic modalities for CAN exist, this study exclusively employed CVRR as a measure. Nevertheless, the simplicity and non-invasive nature of CVRR make it a valuable diagnostic tool for detecting CAN. Furthermore, the inclusion of patients who underwent kidney biopsies facilitated precise diagnoses and enabled comprehensive histopathological assessments. Although no pharmacological treatments for CAN have been proven effective, managing risk factors, such as obesity, hypertension, smoking and dyslipidemia, may help prevent its progression. Future research is essential to develop more effective therapeutic strategies for CAN.