Gerard GS, Borner A, Lohwasser U, Simon MR (2017) Genome-wide association mapping of genetic factors controlling Septoria tritici blotch resistance and their associations with plant height and heading date in wheat. Euphytica 213:27.
Abrinbana, M., Mozafari, J., Shams-bakhsh, M., Mehrabi, R. (2010). Genetic structure of Mycosphaerella graminicolapopulations in Iran. Plant Pathol 59:829–838.
Abrinbana M, Mozafari J, Shams-Bakhsh M, Mehrabi R (2012) Resistance spectra of wheat genotypes and virulence patterns of Mycosphaerella graminicola isolates in Iran. Euphytica 186:75–90.
Adhikari TB, Anderson JM, Goodwin SB (2003) Identification and molecular mapping of a gene in wheat conferring resistance to Mycosphaerella graminicola. Phytopathology 93(9):1158-1164
Adhikari TB, Cavaletto JR, Dubcovsky J, Gieco JO, Schlatter AR, Goodwin SB (2004a) Molecular mapping of the Stb4 gene for Resistance to Septoria tritici Blotch in Wheat. Phytopathology 94(11): 1198-1206
Adhikari TB, Yang X, Cavaletto JR, Hu X, Buechley G, Ohm HW, Shaner G., Goodwin SB (2004b) Molecular mapping of Stb1, a potentially durable gene for resistance to Septoria tritici blotch in wheat. Theor Appl Genet 109:944–953.
Aghamiri A, Mehrabi R, Talebi R (2015) Genetic diversity of Pyrenophera tritici-repentis isolates, the causal agent of wheat tan spot disease from Northern Iran. Iran J Biotech 13(2):e1118.
Alam M, Neal J, O’Connor K, Kilian A, Topp B (2018) Ultra-high-throughput DArTseq-based silicoDArT and SNP markers for genomic studies in macadamia. PLoS ONE 13(8):e0203465.
Andersen EJ, Ali S, Byamukama E, Yen Y, Nepal MP (2018) Disease resistance mechanisms in plants. Genes 9:39.
Arraiano LS, Brown JKM (2017) Sources of resistance and susceptibility to Septoria tritici blotch of wheat. Mol Plant Pathol 18 (2):276–292.
Arraiano L, Brown J (2006) Identification of isolate-specific and partial resistance to septoria tritici blotch in 238 European wheat cultivars and breeding lines. Plant Pathol 55 (6):726–738.
Arraiano LS, Chartrain L, Bossolini E, Slatter HN, Keller B, Brown JKM (2007) A gene in European wheat cultivars for resistance to an African isolate of Mycosphaerella graminicola. Plant Pathol 56:73–78.
Arraiano LS, Worland AJ, Ellerbrook C, Brown JKM (2001b) Chromosomal location of a gene for resistance to Septoria trictici blotch (Mycosphaerella graminicola) in the hexaploid wheat ‘Synthetic 6x’. Theor Appl Genet 103:758–764.
Bansal M, Adamski NM, Toor PI, Kaur S, Molnar I, Holušova K, Vrana J, Doležel D, Valarik M, Uauy C, Chhuneja P (2020) Aegilops umbellulata introgression carrying leaf rust and stripe rust resistance genes Lr76 and Yr70 located to 9.47-Mb region on 5DS telomeric end through a combination of chromosome sorting and sequencing. Theor Appl Genet 133:903–915
Bartoli C, Roux F (2017) Genome-Wide Association Studies InPlant Pathosystems: Toward anEcological Genomics Approach. Front Plant Sci 8:763.
Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES (2007) TASSEL: software for association mapping ofcomplex traits in diverse samples.Bioinformatics 23: 2633–2635.
Brading PA, Verstappen ECP, Kema GHJ, Brown JKM (2002) A gene-for-gene relationship between wheat and Mycosphaerella graminicola, the Septoria tritici blotch pathogen. Phytopathology 92:439–445.
Brown J K, Chartrain L, Lasserre-Zuber P, Saintenac C (2015) Genetics of resistance to Zymoseptoria tritici and applications to wheat breeding. Fungal Genet Biol 79: 33–41.
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopouloset J, Bealer K, Madden TL (2009) BLAST+: architecture and applications. BMC Bioinformatics 10:421.
Chartrain L, Berry ST, Brown JKM (2005a) Resistance of wheat line Kavkaz-K4500 L.6.A.4 to Septoria tritici blotch controlled by isolate-specific resistance genes. Phytopathol 95:664–671.
Chartrain L, Brading PA, Brown JKM (2005b) Presence of the Stb6 gene for resistance to Septoria tritici blotch (Mycosphaerella graminicola) in cultivars used in wheat-breeding programmes worldwide. Plant Pathol 54:134–143.
Chartrain L, Brading PA, Widdowson JP, Brown JKM (2004) Partial resistance to Septoria tritici blotch (Mycosphaerella graminicola) in the wheat cultivars Arina and Riband. Phytopathol 94:497–504.
Chartrain L, Joaquim P, Berry ST, Arraiano LS, Azanza F, Brown JKM (2005c) Genetics of resistance to Septoria tritici blotch in the Portuguese wheat breeding line TE9111. Theor Appl Genet 110:1138–1144.
Chartrain L, Sourdille P, Bernard M, Brown JKM (2009) Identification and location of Stb9, a gene for resistance to Septoria tritici blotch in wheat cultivars Courtot and Tonic. Plant Pathol 58:547–555.
Cowger C, Hoffer ME, Mundt CC (2000) Specific adaptation by Mycosphaerella graminicola to a resistant wheat cultivar. Plant Pathol 49:445–451.
Cowling SG (2006) Identification and Mapping of Host Resistance Genes to Septoria tritici Blotch of Wheat. Ph.D. thesis, University of Manitoba.
Dreisigacker S, Wang X, Cisneros BAM, Jing R, Singh PK (2015) Adult‑plant resistance toSeptoria tritici blotch inhexaploid spring wheat. Theor Appl Genet 128:2317–2329.
Egea LA, Mérida-García R, Kilian A,Hernandez P and Dorado G (2017)Assessment of Genetic Diversityand Structure of Large Garlic (Allium sativum) Germplasm Bank, byDiversity Arrays Technology“Genotyping-by-Sequencing”Platform (DArTseq). Front Genet 8:98.
Eriksen L, Borum F, Jahoor A (2003) Inheritance and localisation of resistance to Mycosphaerella graminicola causing Septoria tritici blotch and plant height in the wheat (Triticum aestivum L.) genome with DNA markers. Theor Appl Genet 107:515–527.
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters ofindividuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620.
Fu S, Ren Z, Chen X, Yan B, Tan F, Fu T, Tang Z (2014) New wheat-rye 5DS-4RS_4RL and 4RS-5DS-5DL translocation lines with powdery mildew resistance. J Plant Res 127:743–753
Ghaneie A, Mehrabi R, Safaie N, Abrinbana M, Saidi A, Aghaee M (2012) Genetic variation for resistance to septoria tritici blotch in Iranian tetraploid wheat landraces. Eur J Plant Pathol 132 (2):191-202.
Goodwin SB, Cavaletto JR, Thomson I, Xu SS, Adhikari TB, Dubcovsky J (2015) A new map location of gene Stb3 for resistance to septoria tritici blotch in wheat. Crop Sci 55(1):35-43.
Goodwin SB (2007) Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat. Australas. Plant Pathol 36:532–538.
Goudemand E, Laurent V, Duchalais L, Ghaffary SMT, Kema GHJ, Lonnet P, Margalé E, Robert O (2013) Association mapping and meta-analysis: two complementary approaches for the detection of reliable Septoria tritici blotch quantitative resistance in bread wheat (Triticum aestivum L.). Mol Breed 32:563–584.
Hammer Ø, Harper DAT, Ryan PD (2001) Paleontological statistics software package for education and data analysis. Palaeontol Electron 4: 9±18.
Han GZ (2019) Origin and evolution of the plant immune System. New Phytologist 222: 70–83.
Hardwick NV, Jones DR, Slough JE (2001) Factors affecting diseases in winter wheat in England and Wales, 1989–98. Plant Pathol 50:453– 462.
Haueisen J, Möller M, Eschenbrenner CJ, Grandaubert J , Seybold H, Adamiak H, Stukenbrock EH (2019) Highly flexible infection programs in a specialized wheat Pathogen. Ecol Evol 9:275–294.
He Y, Ahmad D, Zhang X, Zhang Y, Wu L, Jiang P, Ma H (2018) Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.). BMC Plant Biol 18:67.
Hedtmann C, Guo W, Reifschneider E, Heiber I, Hiltscher H, van Buer J, Barsch A, Niehaus K, Rowan B, Lortzing T, Steppuhn A and Baier M (2017) The plant immunity regulating F-Box protein CPR1 supports plastid function in absence of pathogens.Front. Plant Sci 8:1650.
Hosseinnezhad A, Khodarahmi M, Rezaee S, Mehrabi R, Roohparvar R (2014) Effectiveness determination of wheat genotypes and Stb resistance genes against Iranian Mycosphaerella graminicola isolates. Arch Phytopathol Plant Protec 47(17):2051-2069.
Ibrahim AK, Zhang L, Niyitanga S, Afzal MZ, Yi Xu Y, Zhang L, Zhang L, Qi J (2020) Principles and approaches of association mapping in plant breeding. Trop Plant Biol 13:212–224
Jing HC, Lovell D, Gutteridge R, Jenk D, Kornyukhin D, Mitrofanova OP, Kema GH, Hammond-Kosack KE (2008) Phenotypic and genetic analysis of the Triticum monococcum – Mycosphaerella graminicola interaction. New Phytol 179:1121-1132.
Juliana P, Singh RP, Singh PK, Poland JA, Bergstrom GC, Huerta-Espino J, Bhavani S, Crossa J, Sorrells ME (2018) Genome-wide association mapping for resistance to leaf rust, stripe rust and tan spot in wheat reveals potential candidate genes. Theor Appl Genet 131:1405–1422.
Kaler AS, Gillman JD, Beissinger T, Purcell LC (2020) Comparing different statistical models and multiple testing corrections for association mapping in soybean and maize. Front Plant Sci 10:1794.
Kema GH, Gohari AM, Aouini L, Gibriel HA, Ware SB, van Den Bosch F, Manning-Smith R, Alonso-Chavez V, Helps J, M’Barek SB (2018) Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance. Nature Genet 50 (3):375
Kema GHJ, Van Silfhout CH (1997) Genetic variation for virulence and resistance in the wheat–Mycosphaerella graminicola pathosystem. III. Comparative seedling and adult plant experiments. Phytopathol 87: 266 72.
Kema GHJ, Sayoud R, Annone JG, van Silfhout CH (1996) Genetic variation for virulence and resistance in the wheat-Mycosphaerella graminicola pathosystem. 2. Analysis of interactions between pathogen isolates and host cultivars.Phytopathol 86:213–220.
Kema GHJ, Verstappen ECP, Waalwijk C (2000) Avirulence in the wheat Septoria tritici leaf blotch fungus Mycosphaerella graminicola is controlled by a single locus. Mol Plant Microbe Interact 13:1375–1379.
Kidane YG, Hailemariam BN, Mengistu DK, Fadda C, Pè ME and Dell’Acqua M (2017) Genome-Wide Association Study of Septoria tritici Blotch Resistance in Ethiopian Durum Wheat Landraces. Front Plant Sci 8:1586.
Kushalappa AC, Yogendra KN, Karre S (2016) Plant innate immune response: qualitative and quantitative resistance. Critical Rev Plant Sci 35(1): 38–55
Langlois-Meurinne M, Gachon CMM, Saindrenan P (2005) Pathogen-responsive expression of Glycosyltransferase genes UGT73B3 and UGT73B5 Is necessary for resistance to Pseudomonas syringae pv tomato in arabidopsis. Plant Physiol 139:1890–1901
Lassner MW, Peterson P, Yoder JI (1989) Simultaneous amplification of multiple DNA fragments by polymerase chain reaction in the analysis of transgenic plants and their progeny. Plant Mol Biol Report 7:116–128.
Lipka AE, Tian F, Wang Q, Peiffer J, Li M, Bradbury PJ, Gore MA, Buckler ES, Zhang Z. GAPIT: genome association and prediction integrated tool. Bioinformatics 28(18):2397-9.
Liu S, Bai G, Lin M, Luo M, Dadong D, Jin F, Tian B, Trick HN, Yan L (2020) Identification of candidate chromosome region of Sbwm1 for Soil-borne wheat mosaic virus resistance in wheat. Sci Rep 10:8119.
Maccaferri M, Zhang J, Bulli P, Abate Z, Chao SH, Cantu D, Bossolini E, Chen X, Pumphery M, Dubcovsky J (2015) A genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in a worldwide collection of hexaploid spring wheat (Triticum aestivum L.). G3 5:449-465.
Mahboubi M, Talebi R, Aghaee Sarbarzeh M, Naji AM, Mehrabi R (2020) Resistance and virulence variability in wheat–Zymoseptoria tritici interactions. Crop Pasture Sci 71(7) 645-652.
Makhdoomi A, Mehrabi R, Khodarahmi M, Abrinbana M (2015) Efficacy of wheat genotypes and Stb resistance genes against Iranian isolates of Zymoseptoria tritici. J Gen Plant Pathol 81(1):5-14.
McCartney CA, Brûlé-Babel AL, Lamari L, Somers DJ (2003) Chromosomal location of a race specific resistance gene to Mycosphaerella graminicola in the spring wheat ST6. Theor Appl Genet 107:1181–1186.
Mehrabi R, Makhdoomi A, Jafar-Aghaie M (2015) Identification of new sources of resistance to septoria tritici blotch caused by Zymoseptoria tritici. J Phytopathol 163 (2):84-90.
Mehrabi R, van der Lee T, Waalwijk C, Kema GHJ (2006) MgSlt2, a cellular integrity MAP kinase gene of the fungal wheat pathogen Mycosphaerella graminicola, is dispensable for penetration but essential for invasive growth. Mol Plant Microbe Interact 19:389-398.
Mirdita V, Liu G, Zhao Y, Miedaner T, Longin CFH, Gowda M, Mette MF, Reif JC (2015) Genetic architecture is more complex for resistance to Septoria tritici blotch than to Fusarium head blight in Central European winter wheat. BMC Genom 16:430.
Mirzadi Gohari A, Ware SB, Wittenberg AH, Mehrabi R, Ben M’Barek S,Verstappen EC, van der Lee TA, Robert O, Schouten HJ, de Wit PP, Kema GHJ (2015) Effector discovery in the fungal wheat pathogen Zymoseptoria tritici. Mol Plant Pathol 16: 931–945.
Misas-Villamil JC, Hoorn RAL, Doehlemann G (2016) Papain-like cysteine proteases as hubs in plant immunity. New Phytol 212:902–907.
Mohammadi N, Mehrabi R, Gohari AM, Mohammadi GE, Safaie N, Kema GHJ (2017) The ZtVf1 transcription factor regulates development and virulence in the foliar wheat pathogen Zymoseptoria tritici . Fungal Genet Biol 109:26– 35.
Mohler V, Schmolke M, Zeller FJ, Hsam SLK (2020) Genetic analysis of Aegilops tauschii-derived seedling resistance to leaf rust in synthetic hexaploid wheat. J Appl Genet 61:163–168
Monostori I, Szira F, Tondelli A, Arendas T, Gierczik K, Cattivelli L, Galiba G, Vagujfalvi A (2017) Genome-wide association study and genetic diversity analysis on nitrogen use efficiency in a Central European winter wheat (Triticum aestivum L.) collection. PLoS ONE 12(12):e0189265.
Muqaddasi QH, Zhao Y, Rodemann B, Plieske J, Ganal MW, Röder MS (2019) Genome-wide association mapping and prediction of adult stage blotch infection in european winter wheat via high-density marker arrays. Plant Genome 12 (1).
Nielsen NH, Backes G, Stougaard J, Andersen SU, Jahoor A (2014) Genetic diversity and population structure analysis of European hexaploid bread wheat (Triticum aestivum L.) varieties. PLoS One 9:e94000.
Odilbekov F, Armoniené R, Koc A, Svensson J and Chawade A (2019) GWAS-assisted genomic prediction to predict resistance to septoria tritici blotch in nordic winter wheat at seedling stage. Front Genet 10:1224.
Pandian BA, Sathishraj R, Djanaguiraman M, Prasad PVV, Jugulam M (2020) Role of Cytochrome P450 enzymes in plantstress response. Antioxidants 9:454.
Poppe S, Dorsheimer L, Happel P, Stukenbrock EH (2015) Rapidly evolving genes are key players in host specialization and virulence of the fungal wheat pathogen Zymoseptoria tritici (Mycosphaerella graminicola). PLoS Pathog 11(7): e1005055.
Rajniak J, Barco B, Clay NK, Sattely ES (2015) A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence. Nature 525:376–379.
Riaz A, KockAppelgren P, Hehir JG, Kang J , Meade F, Cockram J , Milbourne D , Spink J, Mullins E, Byrne S (2020) Genetic analysis using a multi-parent wheat population identifies novel sources of septoria tritici blotch resistance. Genes 11:887.
Richau KH, Kaschani F, Verdoes M, Pansuriya TC, Niessen S, Stuber K, Colby T, Overkleeft HS, Bogyo M, Van der Hoorn RAL (2012) Subclassification and biochemical analysis of plant papain-likecysteine proteases displays subfamily-specific characteristics. Plant Physiol 158:1583–1599.
Sansaloni CP, Petroli CD, Carling J, Hudson CJ, Steane DA, Myburg AA,Grattapaglia D, Vaillancourt RE, Kilian A (2011) A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus. Plant Methods 6:16.
Simón MR, Worland AJ, Struik PC (2005) Chromosomal location of genes encoding for resistance to septoria tritici blotch (Mycosphaerella graminicola) in substitution lines of wheat. NJAS Wagening J Life Sci 53:113–129.
Sokal RR, Rohlf FJ(1995) Biometry: The principles and practice of statistics in biological research,3rd edition. W.H. Freeman and Company, New York.
Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109:1105–1114.
Stukenbrock EH, Banke S, Javan-Nikkhah M, McDonald BA (2007) Origin and domestication of the fungal wheat pathogen Mycosphaerella graminicola via sympatric speciation. Mol Biol Evol 24:398–411.
Suffert F, Sache I, Lannou C (2011) Early stages of septoria tritici blotch epidemics of winter wheat: build-up, overseasoning, and release of primary inoculum. Plant Pathol 60:166-177.
Tabib Ghaffary SM, Faris JD, Friesen TL, Visser RGF, van der Lee TAJ, Robert O, Kema GHJ (2012) New broad-spectrum resistance to Septoria tritici blotch derived from synthetic hexaploid wheat. Theor Appl Genet 124:125–142.
Tabib Ghaffary SM, Robert O, Laurent V, Lonnet P, Margale E, van der Lee TAJ, Visser RGF, Kema GHJ (2011) Genetic analysis of resistance to Septoria tritici blotch in the French winter wheat cultivars Balance and Apache. Theor Appl Genet 123:741–754.
Talebi R, Mardi M, Jelodar NB, Razavi M, Pirseyedi SY, Kema G, Mehrabi R, Marcel T (2010) Specific resistance genes in wheat chinese landrace ‘Wangshuibai’ against two Iranian Mycosphaerella graminicola isolates. Int J Biol 2:181-188.
Torriani SF, Brunner PC, McDonald BA, Sierotzki H (2009) QoI resistance emerged independently at least 4 times in European populations of Mycosphaerella graminicola. Pest Manag Sci 65 (2):155-162.
Vagndorf N, Nielsen NH, Edriss V, Andersen JR, Orabi J, Jørgensen LN, Jahoor A (2017) Genome-wide association study reveals novel quantitativetrait loci associated with resistance towards Septoria tritici blotch in North European winter wheat. Plant Breed 136(4):474–482.
Van Damme EJM, Lannoo N, Peumans WJ (2008) Plant lectins. Adv Bot Res 48:107-209.
VanRaden PM (2008) Efficient methods to compute genomic predictions.J. Dairy Sci 91:4414-4423.
Yan Q, Cui X, Lin S, Gan S, Xing H, Dou D (2016) GmCYP82A3, a Soybean Cytochrome P450Family Gene Involved in the Jasmonic Acid and Ethylene Signaling Pathway, Enhances PlantResistance to Biotic and Abiotic Stresses. PLoS ONE 11(9): e0162253.
Yang N, McDonald MC, Solomon PS, Milgate AW (2018) Genetic mapping of Stb19, a new resistance gene to Zymoseptoria tritici in wheat. Theor Appl Genet 131(12):2765-2773.
Yates S, Mikaberidze A, Krattinger SG, Abrouk M, Hund A , Yu K, Studer B, Fouche S, Meile L, Pereira D, Karisto P, McDonald BA (2019) Precision phenotyping reveals novel loci for quantitative resistance to septoria tritici blotch. Plant Phenomics 2019: 3285904
Yu J, Pressoir G, Briggs WH, Vroh BI, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen DM, Holland JB, Kresovich S, Buckler ES (2006) A unifed mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38:203–208.
Zhang Z, Ersoz E, Lai CQ, Todhunter RT, Tiwari HK, Gore MA, Bradbury PJ, Yu J, Arnett DK, Ordovas JM, Buckler ES (2010) Mixed linear model approach adapted for genome-wide association studies. Nat Genet 42:355–360.