Clinical cases
We evaluated pathological specimens of 150 Ad-CRC cases, surgically resected between 2009 and 2021, at Kitasato University Hospital, according to the criteria of the Japanese Classification of Colorectal, Appendiceal, and Anal Carcinoma and the TMN classification [17,18]. We also selected 177 LAd-RC cases, which were defined as clinical T3 or T4, N0 to N2, or M0 tumors, that underwent NCRT [19], followed by total mesorectal excision at Kitasato University Hospital between 2006 and 2021. Pretreatment-biopsied samples from 106 NCRT-treated LAd-RC patients were also investigated. In addition, 20 samples of normal colorectal epithelium adjacent to the tumors, low-grade adenoma, high-grade adenoma, carcinoma in adenoma, and non-invasive CRC, respectively, were also examined. This study was approved by the Kitasato University Medical Ethics Committee (B19-155).
Evaluation of histopathological findings
Tumor budding (BD) [20] and the BD score was evaluated according to the criteria of the Japanese Classification of Colorectal, Appendiceal, and Anal Carcinoma [17]. Ad-CRC lesions were subcategorized into three groups based on the depth of tumor invasion as follows: mucosal (m), submucosal (sm), and muscularis propria/subserosal (mp/ss) layers. NCRT-treated LAd-RC cases were also subclassified into three groups on the basis of the therapeutic efficacy (TE) of NCRT, as follows: grade (G) 1, mild efficacy; G2, moderate; and G3, no tumor elements, according to the criteria of the Japanese Classification of Colorectal, Appendiceal, and Anal Carcinoma [17].
Immunohistochemistry (IHC)
IHC was performed using a combination of microwave -oven heating and immuno-enzyme polymer (Nichirei Bioscience Inc, Tokyo, Japan) and the evaluation for S100A4 score and nuclear b-catenin and Ki-67 immunopositive labeling indices (LIs) was performed as described previously [21]. The S100A4 scores and nuclear b-catenin LIs were subdivided into two categories based on the mean – standard deviation (SD) or mean values as cutoff (Supplementary Figure S1). p53 immunopositivity was subdivided into mutant (mt, 0% or 60–100%) and wild type (wt, 1–59%) classes [22]. The cleaved PARP1 IHC score was derived from counting cells in five randomly selected high-power fields (HPFs).
An S100A4 KO CRC cell line was generated using HCT-116 (ATCC, Manassas, VA, USA). Briefly, the guide RNA sequence (gRNA: 5’-CCACAAGTACTCGGGCAAAG-3’) was designed using CRISPRdirect (https://crispr.dbcls.jp) and cloned into pSpCas9n(BB)-2A-Puro (PX459) V2.0 (Addgene #62988) to establish the S100A4 KO cell line as described previously [21]. We also used the following plasmids: pcDNA-b-catenin△S45, pCI-p300, pGL3B-(-1976/+1012) S100A4-luc, and pCMVp53wt as described previously [23, 24].
Antibodies and reagents
Antibodies are listed in Supplementary Table S1. Adriamycin (ADR) was obtained from Sigma-Aldrich Chemicals (St. Louis, MO, USA).
Western blot and co-immunoprecipitation (co-IP) assays
Isolation of total cellular proteins and western blot and co-IP assays were carried out as described previously [21, 23–25]. The signals were analyzed using ImageJ software version 1.41 (NIH, Bethesda, MD, USA; http//imgaeJ.nih.gov/ij) as described previously [25]. The reconstructed images of all blots with membrane edges visible are accessible in the Supplementary Materials, because some of the original full-length blots were cut prior to hybridization with antibodies.
Cell cycle analysis using a BD FACS Calibur instrument (BD Biosciences, Franklin Lakes, NJ, USA) and CellQuest Pro software v3.3 (BD Biosciences) as described previously [21, 25].
Proximity ligation assay (PLA)
Mouse b-catenin or mouse p53 were used alone (negative controls) or in combination with rabbit S100A4 antibody. The slides were treated using the Duolink Detection kit with PLA PLUS and MINUS probes for mouse and rabbit antibodies, respectively (Olink Bioscience, Uppsala, Sweden). Average number of intranuclear and intracytoplasmic PLA signals were expressed as an signals per cell as described previously [26].
Cell Counting Kit-8 assay
Cell viability after ADR treatment was evaluated using the Cell Counting Kit-8 (CCK-8; Dojindo Lab, Kumamoto, Japan), according to the manufacture’s instructions.
Apoptotic index
The number of apoptotic cells identified in HE-stained sections was calculated by counting the mean number of apoptotic figures per field as described previously [27].
Transfection and luciferase assay
Transfection was carried out using LipofectAMINE PLUS (Invitrogen, Carlsbad, CA, USA) and luciferase activity was assayed 24 h after transfection using the Dual-luciferase reporter assay system (Promega) as described previously [24, 25].