Human liver samples
Human liver specimens were obtained from 11 patients diagnosed with gallstones at the Ningxia Medical University Second Affiliated Hospital (Yinchuan, China). And then they were divided into NAFLD group (n = 5) and NAFLD control group (Non-NALFD, n = 6) by ultrasound and pathological analysis of liver biopsy. This study was approved by the Institutional Ethics Committee of Ningxia Medical University and Ningxia Medical University Second Affiliated Hospital (approval number: 2019 − 228). All research was conducted in accordance with both the Declarations of Helsinki and Istanbul. Written consent was given in writing by all subjects. The steatosis indices of these liver specimens were accessed using H&E and Oil Red O staining.
Animal experiments
All institutional and national guidelines for the care and use of laboratory animals were followed. All the animal experiments were approved by the Animal Care and Use Committee of the Institute of Experimental Animals, Chinese Academy of Medical Sciences and Beijing Union Medical College (yzw22002). All the experiments were conducted with male mice. Liver-specific Enpp1 knockout (Enpp1fl/fl-Alb-Cre, CKO) mice were generated by crossing a male Alb-Cre+/− mouse to a female Enpp1fl/fl mouse, which were developed by Beijing Viewsolid Biotech. The db/db mice (genetic models of NAFLD) were also purchased from Beijing Viewsolid Biotech. CKO mice and controls were fed with a normal chow diet (NCD) or a high-fat diet (HFD: 60% calories from fat, 0.28% from cholesterol, and 20% calories from carbohydrate; Research Diets catalog MD12033, Medi-science, China) for 16 weeks.
For the over-expression of hepatic Enpp1, C57BL/6J male mice (8 weeks of age) were maintained on a HFD for 8 weeks and then injected with an Enpp1 liver-specific over-expression adenovirus (AAV8·Enpp1, 2×1012 genome copies) purchased from Vigene Bioscience, Shandong, China; and the mice were maintained on HFD diet for another 8 weeks. Mice were fasted for 6 h and anesthetized, after which the serum, liver tissue, and adipose tissue from the epididymis were collected.
Serum enzyme and lipid assays
All groups of mice were fasted for 6 h and then anesthetized for enucleation to collect serum samples. A biochemical analyzer ((Mindray, China) was used to measure the serum levels of the liver enzymes alanine transaminase (ALT) and aspartate transaminase (AST), and the serum lipid contents of the triglyceride (TG), total cholesterol (T-CHO), low-density lipoprotein cholesterol (LDL-C) according to the manufacturer’s instructions. In liver tissues and cells, the TG content was measured using a triglyceride assay kit (A110-1-11, Nanjing Jiancheng) and the liver total cholesterol (T-CHO) was measured by a total cholesterol assay kit (A111-1-11, Nanjing Jiancheng), then normalize the obtained result to the protein concentration.
Intravenous glucose tolerance test (IGTT) and insulin tolerance test (ITT)
Glucose tolerance tests and insulin tolerance tests were conducted in mice that had been fasted for 6 h, using intraperitoneal injections of glucose (2 mg/g) or insulin (0.75 IU/10 g). Blood glucose levels were determined through tail bleeding (Sanocare Stable Non-adjustable Blood Glucose Test Strips, China) at predetermined intervals (0, 30, 60, 90, 120 min). The area under the curve (AUC) was calculated by summation of trapezoids.
Western blotting
Cells and liver tissues were lysed with RIPA lysis buffer containing a protease inhibitor and phosphatase inhibitor. Subsequently, the protein lysis solution was centrifuged to obtain a supernatant, after which the protein concentration was measured. The protein samples were separated via 10% SDS-PAGE and transferred onto an NC membrane. All the antibodies were used in this study including anti-Enpp1 (1:2000, #2061S, Cell Signaling Technology), anti-phospho-AMPK (Thr172) (1:2000, #50081S, Cell Signaling Technology), anti-AMPK (1:2000, #2532S, Cell Signaling Technology), anti-PPARα (1:2000, #15540-1-AP, Proteintech), HRP-conjugated anti-β-actin antibodies (1:5000, #KC-5A08, KANGCHEN) and HRP-conjugated anti-rabbit IgG antibodies (1:10000, #b31402, Thermo Fisher Scientific).
Quantitative PCR (qPCR)
Total RNA was extracted from liver tissue using a Total RNA Isolation Kit (#RC112-01, Vazyme) and was subsequently reverse-transcribed into cDNA via an RT reagent kit. Real-time qPCR was performed with SYBR Green PCR Master Mix (#Q311-02, Vazyme) according to the manufacturer’s protocol. Relative changes in mRNA expression were calculated by the 2−ΔΔCt method. Information about the sequences of primers used is listed in Table S1.
Oil red O staining
Fresh liver tissues were submerged in a 30% sucrose solution at 4°C for dehydration. Subsequently, the tissues were excised into 8 µm thick frozen section, and Oil red O staining was carried out using an Oil red O stain kit (#G1261, Solarbio) as the instructions provided by the manufacturer. In the case of hepatocyte Oil red O staining, AML-12 cells were fixed in 4% paraformaldehyde for 30 min at room temperature, then stained with the oil red O staining solution for 15 min and rinsed with PBS.
Periodic Acid-Schiff staining
Mouse liver tissues were fixed in a 10% neutral formalin solution. Following fixation, the tissues were processed for paraffin embedding and sectioned into thin slices using standard histological techniques. The paraffin sections were then subjected to Periodic Acid-Schiff (PAS) staining according to the manufacturer's protocol provided with the staining kit (#S1281, Solairbio). The positive areas of PAS staining were quantified using Image J software.
Quantitation of adipocyte size
Tissue sections from epididymal adipose tissue were stained with hematoxylin and eosin (H&E). Image J software was used to measure adipocyte area, which is represented as the average adipocyte area (in µm2). Adipocyte size was measured from five mice per group (> 300 cells/group).
RNA sequencing
Total RNA was extracted, and cDNA libraries were constructed for profiling of gene expression differences. DESeq2 was used to calculate differential gene expression. Genes with a |log2FC|>1 and a P-value < 0.05 were defined as differential genes. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway annotations of all genes in the reference genome were downloaded from the KEGG database. Pathways with P values less than 0.05 were defined as significantly enriched pathways.
GEO database mining
Raw data were deposited in the Gene Expression Omnibus (GEO) database (https://www.ncbi.nlm.nih.gov/geo/) under the accession number of GSE126848. Genes showing |log2 fold change | > 0.5 and adjusted P values < 0.05 were considered to present differential expression.
Cell treatment and transfection
AML-12 cells (normal mouse hepatocytes) were cultured in DMEM/F12 medium (#ZQ606, Shanghai Zhong Qiao Xin Zhou Biotechnology Co.,Ltd.), supplemented with 10% FBS, 100 U/ml penicillin and streptomycin. The cells were plated at a density of 3 x 105 cells on 6-well collagen (Sigma) coated plates and transfected with 100 nM Enpp1-siRNA (F:5'-GUCUCAGUGUCCAAUCAAATT-3'; R:5'-UUUGAU-
UGGACACUGAGACTT-3') or 4 µg/µl Enpp1 over-expression plasmid according to the manufacturer’s instructions, and then treated with 200 µM Palmitic acid (PA) to constructe the NAFLD cell model.
Measurement of the AMP-to-ATP Ratio in Cells
The extraction of intracellular AMP and ATP from according to previously reported methods [15]. Then the concentration of AMP and ATP was measured with corresponding assay kits (#V5011, Promega and #S0026, Solarbio) according to the protocol supplied by the manufacturer.
Statistical analysis
The statistical data were analyzed by using GraphPad Prism 9. Comparisons between two groups were determined by an unpaired two-tailed t test. For comparisons among multiple groups, one-way analysis of variance (ANOVA) was used. The data were expressed as the mean ± SEM. P < 0.05 was considered statistically significant.