2.1 Animals
A cohort of 50 healthy male C57BL/6 mice, aged 10 weeks and weighing between 25–30 grams, was procured from the Animal Experiment Center at Kunming Medical University. Prior to the commencement of the study, these mice were allowed a week-long acclimatization period under standard conditions. The mice were then allocated into four groups: Sham, Sham + WMP (Wu Mei Pill), PD model, and PD + WMP, with each group comprising 10 mice. They were subjected to the modeling process and received intragastric doses of WMP as illustrated in Fig. 1A. Ethical clearance for this study was granted by the Animal Experiment Ethics Committee of Kunming Medical University, under the approval code KMMU20231408. The methodologies employed throughout this research adhered rigorously to the ethical standards and guidelines delineated in the Guide for the Care and Use of Laboratory Animals, affirming the ethical and compassionate treatment of all animal subjects involved.
2.2 Model Creation and Wu Mei Pill (WMP) Administration
6-OHDA Unilateral Lesion Procedure: Prior to the procedure, mice designated for the model group were subjected to a 24-hour fasting period, although they were allowed unrestricted access to water. Following anesthesia, these mice underwent a craniotomy, during which 6-OHDA (catalog number H197233, sourced from Aladdin, China) at a volume of 2µl and concentration of 5mg/ml, was meticulously injected into the left striatum (coordinates: AP: +0.3; ML: +2.3; DV: -2.9) at a rate of 0.5µl/min using a precision stereotaxic apparatus. Post-operative care involved keeping the mice warm for two hours before their return to their respective cages for recovery monitoring.
WMP Treatment Protocol
Wu Mei Pill (WMP) (procured from KUNZHONGYAO, China) was administered intragastrically at a dosage of 0.1mg/g body weight, delivered in a 200µl volume, on a daily basis starting one week prior to the modeling procedure and continuing after the modeling until the conclusion of the study period, as delineated in Figs. 1A and B.
APO Rotation Assessment
Commencing in the second week following surgery, the mice were administered an intraperitoneal injection of apomorphine (APO) solution (catalog number A276058, from Aladdin, China) at a dosage of 0.5µg/g body weight. The subjects were then placed in a sterile enclosure, and their rotations towards the side opposite to the lesion were recorded for a duration of 30 minutes. A criterion of more than 7 rotations per minute was established as indicative of successful lesion modeling. This assessment was performed on a weekly basis until a week prior to the collection of samples for analysis, as shown in Fig. 1B.
2.3 Preparation of Brain Tissue Samples
Brain tissues from ten mice in each experimental group underwent fixation through perfusion. Additionally, brains from another subset of five mice per group were carefully separated into their left and right hemispheres. These brain samples were then lysed using RIPA lysis buffer (Catalog No. P0013J, from Beyotime, China), which included a 1% solution of PMSF (Catalog No. P0100, Solarbio, China) for preservation. Post-lysis, the tissues were stored at a temperature of -80°C for further analysis.
2.4 Conduct of Behavioral Assessments
Pole Climbing Test
Mice were individually placed atop a pole with a height of 55 centimeters, and the duration required for each mouse to descend was meticulously recorded. To ensure accuracy, this procedure was repeated three times for each mouse, with the mean of these three trials calculated and recorded as the data point for the experiment.
Rota-Rod Performance
Prior to any testing, mice were allowed a 30-minute period to familiarize themselves with the test environment. In preparation for the modeling process, the mice participated in adaptive training sessions over three consecutive days, with three sessions daily. These sessions involved maintaining constant speeds of 4 rotations per minute (r), 8 rotations per minute (r), and a progressive acceleration from 4 to 16 rotations per minute (r), each session lasting five minutes. The duration each mouse managed to stay on the rotating rod was documented for subsequent analysis.
Cylinder Test
A 30-minute acclimatization period to the test environment was provided for the mice before commencing the test. During the test, each mouse's interactions with the wall, specifically the number of touches within a 10-minute timeframe, were counted and recorded. This assessment was performed three times for each mouse, and the average value of these trials was computed and utilized as the individual data point for that mouse.
2.5 Immunohistochemical Analysis
Mouse brain specimens were preserved in formaldehyde, then subjected to dehydration through an automated dehydration process, embedded within paraffin, and sectioned. These sections were deparaffinized and rehydrated before undergoing heat-mediated antigen retrieval in a sodium citrate solution (Catalog No. D0081, Beyotime, China). To quench endogenous peroxidase activity, a Peroxidase Blocking Solution (Catalog No. P0100A, Beyotime, China) was applied. To prevent non-specific antibody binding, the tissue sections were treated with 10% goat serum (Catalog No. C-0005, Bioss, China) at ambient temperature for 1 hour. These were then incubated with a primary antibody against TH (Catalog No. T55731, Abmart, China) in a controlled environment at 4°C overnight. The subsequent day, after washing with PBS, the sections were incubated with a secondary antibody (Catalog No. PV9001, ZSGB-BIO, China) at 37°C for 30 minutes. For visualization, DAB (3,3'-Diaminobenzidine) staining was conducted using a DAB Staining Kit (Catalog No. ZLI-9018, ZSGB-BIO, China), followed by a rinse under tap water. Hematoxylin (Catalog No. G1120, Solarbio, China) was used for counterstaining the sections for 1 minute. Following these steps, the sections underwent a final dehydration, clearing, and mounting process. Observations and analyses of the stained sections were performed using a Leica microscope (Model DMi8, Germany).
2.6 Western Blotting
Protein extracts were combined with a 5x loading buffer and subjected to heating at 100°C for a duration of 10 minutes to ensure proper denaturation. The samples were then separated through SDS-PAGE to resolve the proteins based on their molecular weight. After electrophoresis, the proteins were transferred onto a PVDF membrane to facilitate antibody binding. The membrane was then incubated with primary antibodies directed against TH (Catalog No. 66334-1-Ig, Proteintech, China) and β-actin (Catalog No. AF2815, Beyotime, China) to specifically label the proteins of interest. This was followed by the application of a compatible secondary antibody to enhance the detection signal.
2.7 ELISA Assay
The concentrations of dopamine (DA) neurotransmitters present in brain samples were quantified utilizing ELISA kits (Catalog No. RXJ302756, RUIXIN Biotech, China). This process was conducted in strict accordance with the provided instructions of the kit. Optical density (OD) values necessary for quantification were obtained using a microplate reader.
2.8 Microbiome and Metabolome Analysis
At the seventh week following the modeling procedure, fresh fecal specimens were collected from the mice in the Sham, PD model, and PD + WMP groups, ensuring six samples per group for the purpose of microbiome study. Concurrently, brain tissue samples from these groups were also gathered for metabolomic investigation. These samples were then dispatched to Biomarker Technologies (Beijing, China) for comprehensive microbiome and metabolome analyses.
The microbiome datasets were initially processed using Trimmomatic v0.33 to refine the raw sequence data. Primer sequences were identified and excised using the cutadapt software version 1.9.1, resulting in the generation of clean sequences devoid of any primer sequences. The DADA2 algorithm, as implemented within the QIIME2 2020.6 software suite [24,25], facilitated the denoising of the data, thereby producing a final collection of sequences that were free from chimeric artifacts. The processed data was then subjected to various analyses, including but not limited to, the classification of microbial features (e.g., Operational Taxonomic Units [OTUs], Amplicon Sequence Variants [ASVs]), diversity assessments, differential abundance testing, correlation studies, and predictive functional analyses.