Animals
The following mouse lines were used: C57BL/6 mice (The Jackson Laboratory), ACTA1-Cre mice (The Jackson Laboratory), LSL-TurboID-ER (loxP-stop-loxP-TurboID-V5-KDEL generated from Cyagen) mice, and ACTuR (ACTA1-Cre:LSL-TurboID-ER) mice. ROSA26 was targeted by a dual-guide RNA (GGCAGGCTTAAAGGCTAACCTGG, CTCCAGTCTTTCTAGAAGATGGG) for the insertion of the TurboID-ER coding sequence via CRISPR/Cas9-mediated editing to generate LSL-TurboID-ER mice. To label myokines and identify exercise-induced myokines, the Acta1-Cre and LSL-TurboID-ER lines were crossed to produce ACTuR (Acta1-Cre:LSL-TurboID-ER) mice. All the mouse lines were maintained on a C57BL/6 genetic background. The mice were housed in a specific pathogen-free room at the Laboratory Animal Center in the Korea Brain Research Institute (KBRI) that was kept at 20–24°C and 40–60% humidity under a 12–12 h light–dark cycle with dark hours between 20:00–08:00. All mouse experiments were performed in accordance with all ethical regulations and institutional guidelines approved by the Institutional Animal Care and Use Committee (IACUC) of the KBRI. Young male adult (8–11-week-old) mice were randomly assigned to different groups for the experiments. For western blot analysis and LC‒MS/MS with myokines in plasma, ACTuR mice were used. For behavioral analysis after protein injections, protein infusions or viral infections, C57BL/6 wild type mice were used.
Behavioral experiments
Behavioral testing of sedentary or exercised mice began the day after the last day of exercise. Behavioral testing of mice intravenously injected with Serpina1a or Serpina1e for 4 weeks began the day after the final injection. Also, behavioral testing of mice that received multiple infusions of Serpina1e into the hippocampus began the day after the final infusion. Additionally, behavioral testing of mice intramuscularly injected AAV into all four limbs began after 4 weeks from the injection day. The experimenters were blinded to the treatment during testing and analysis.
Voluntary exerciseMale mice (aged 8 to 11 weeks) were housed in pairs either in activity cages with access to an activity wheel or in standard housing cages (controls) for 4 weeks. All exercise experiments were performed in activity cages with a running wheel installed. The total running distance was calculated based on the number of wheel revolutions recorded by a revolution counter. Activity cages with a running wheel and revolution counter were purchased from Ugo Basile. Exercised mice were housed in the activity cages in pairs with free access to unlocked wheels at night (20:00-08:00) by following a 5-day-per-week regimen for four weeks. The control mice were housed in pairs in standard animal facility cages.
Open field testThe open field test was used to determine general activity levels and gross locomotor activity. The assessment took place in a square arena within a specially designed sound attenuating chamber. The arena was 30 cm (L) × 30 cm (W) × 25 cm (H). The mouse was placed in the corner of the testing arena and allowed to explore the arena for 5 min while being tracked by an automated tracking system of SMART3.0 (Panlab) software. Parameters, including distance moved, velocity, and time spent in predefined zones of the arena, were recorded. The arena was cleaned with distilled water and 70% ethanol at the end of the trial.
Elevated plus maze (EPM) test The customized EPM apparatuses had two open arms measuring 30 cm in height and 6 cm in width and two closed arms with a maze wall height of 20 cm and 45 cm in height from the floor. The mice started the EPM test at the center of the maze and freely explored for 5 min while the video was recorded. Parameters, including distance moved and time spent in predefined zones of the arena, were recorded and analyzed with SMART 3.0 (Panlab) software. The arena was cleaned with distilled water and 70% ethanol at the end of the trial.
Forced swimming testThe forced swimming test was performed in a plastic cylinder (26 cm height, 11 cm diameter) filled to a depth of 18.5 cm with water (24–25°C). The mice were exposed to the plastic cylinder for 15 min on the first day. After 24 h, the mice were placed into the same plastic cylinder for 5 min, and the data were recorded by a video camera. The immobility time and latency to the first bout of immobility were manually evaluated.
Rotarod test The accelerated rotarod test was performed on a rotarod (Ugo Basile) with two sessions at 1 h intervals. Each session was subjected to three trials for 5 min with an acceleration of 4–40 rpm, and the results were recorded. For the analysis, the trial showing the longest latency to fall from the second session was selected as the indicator of motor coordination.
Morris water maze testThe Morris water maze was conducted in a circular pool (120 cm diameter). Tempera paint was added to the water until it became opaque, and a hidden platform (17 cm diameter) was placed 1 cm below the water surface. The water temperature was maintained at ±1°C from 21°C. Black curtains surrounded the water tank, and distinct visual cues were hung from the curtains. The mice were monitored via the EthoVision XT (Noldus Information Technology) video tracking system directly above the water tank, and the parameters were measured using EthoVision software. Pseudorandomized platform locations and drop locations were recorded for each mouse, with one trial lasting 60 sec. The trial ended either when the subject rested on the hidden platform for 5 s or when the duration of the trial expired. The trial was repeated four times for each mouse during each day of training. Five days of training were performed, and two days of probe trials were conducted following training. The time to reach the platform was recorded to obtain a learning curve graph of latency to escape. The time spent in the target quadrant, swimming speed, total distance moved and number of platform crossings were analyzed.
CFC testsCFC tests were performed in sound-attenuating chambers equipped with steel shocking floors (Panlab). Freezing behavior in the cages was recorded by a low-light camera, and the shock and freezing behavior analyses were automatically conducted by Packwin software (Panlab). During fear-conditioning training, the mice were habituated to the shock cage for 3 min and then subjected to pairing of a context (box) with a single foot shock for 2 sec at 0.5 mA. The mice were left in the shock cage for an additional 1 min after the shock and then returned to their home cage. The next day, the mice underwent contextual recall testing; contextual testing was performed in the same cages that were used during the training trial. Mouse freezing behavior was tracked over a period of 3 min. To examine long-term memory, the mice were subjected to contextual recall testing in the same context three weeks after the training day.
NOR testNOR tests were conducted in the same arena where the open field tests were previously carried out. On the first day, the mice were habituated to the empty arena for 5 min. After habituation, a pair of identical objects were positioned at distinct corners of the arena, and subsequently, the mice were given a 5-min exploration period within the arena. This procedure facilitated the establishment of baseline familiarity with the objects. After 24 hours, the mice were introduced to a familiar object or a novel object within the same area to assess their discriminatory ability. The discrimination index (DI) was calculated using the time spent exploring a novel object and the time spent exploring a familiar object. The formula was as follows:
Preparation of biotinylated myokines in plasma and tissues
To induce the biotinylation of myokines in ACTuR mice, we intraperitoneally injected biotin (24 mg/kg) dissolved in phosphate-buffered saline (PBS, Gibco). ACTuR mice were euthanized between 08:30 and 10:00. The mice were anesthetized with 1 ml of isoflurane (Piramal) in a sealed plastic box in preparation for perfusion or plasma collection. Blood was collected from the right heart ventricle with 5 µl of 0.5 M EDTA (Sigma‒Aldrich) and centrifuged at 4°C for 20 min at 12,000 rpm to collect the plasma. A protease inhibitor cocktail (P.I.C., Quartett) was added to the plasma. Tissues (brain, skeletal muscle, liver, lung, and heart) were harvested and homogenized with a bead homogenizer (Taco) and RIPA lysis buffer (Rockland). The tissue lysates were harvested from the supernatants of the tissue samples following centrifugation at 4°C for 20 min at 12,000 rpm.
Western blot analysis
The protein concentration was determined using a BCA assay kit (Thermo Scientific) according to the manufacturer's instructions. The samples were boiled for 3 min at 95°C in Laemmli buffer (Bio-Rad) and separated on precast 4‒20% polyacrylamide gels (Bio-Rad). Afterward, the proteins were transferred onto 0.2 µm PVDF membranes via a Turbo transfer system (Bio-Rad). The membranes were blocked for 1 h in 3% skim milk (Sigma‒Aldrich) in 1x TBS (Bio-Rad) with 0.1% Tween 20 (Sigma‒Aldrich), incubated overnight at 4°C with the primary antibody, incubated for 2 h at room temperature with the HRP-conjugated secondary antibody and developed using an ECL prime solution (Thermo Scientific). The antibodies used were rabbit anti-V5 (Cell Signaling Technology), rabbit anti-Serpina1 (Invitrogen), HRP-conjugated anti-rabbit IgG (Bio-Rad), streptavidin-HRP (Thermo Scientific) and rabbit anti-β-actin-HRP antibodies (Cell Signaling Technology).
Mass spectrometry
Sample preparation Harvested plasma samples were lysed with 2% SDS in 1× TBS (25 mM Tris, 0.15 M NaCl, pH 7.2; Thermo Scientific) supplemented with a 1 × protease inhibitor cocktail. The lysates were clarified via ultrasonication (Bioruptor, diagenode) for 15 min in a cold-water bath. To remove free probes, 6 times the sample volume of cold acetone (-20°C, Sigma‒Aldrich) was added to each lysate and kept at -20°C. After at least two hours, the samples were centrifuged at 15,000 × g for 15 min at 4°C. The supernatant was gently removed, and acetone precipitation was repeated with 5 mL of cold acetone containing a ⅙ volume of 1× TBS. After the supernatant was removed, the pellet was solubilized with 8 M urea (Sigma‒Aldrich) in 50 mM ammonium bicarbonate (ABC, Sigma‒Aldrich). The protein concentration was measured, and the samples were denatured at 650 rpm for 1 h at 37°C. After denaturation, the samples were reduced with a final concentration of 10 mM dithiothreitol (Sigma‒Aldrich) and incubated at 650 rpm for 1 h at 37°C. The samples were alkylated by adding 40 mM iodoacetamide (Sigma‒Aldrich) to the final concentration and mixing at 650 rpm for 1 h at 37°C. The samples were diluted eight times with 50 mM ABC, and CaCl2 (Alfa Aesar) was added to achieve a final concentration of 1 mM. Approximately 2 mg of protein sample was digested by adding trypsin (Thermo Scientific, 50:1 w/w) and incubated at 650 rpm for 6–18 h at 37°C. After trypsinization, the digested peptide samples were incubated with 150 µL of streptavidin beads (Pierce, 88817), which were prewashed with 2 M urea in 1× TBS four times prior to sample enrichment. The samples were incubated for 1 h at room temperature with end-over-end rotation. To remove nonspecifically bound peptides, the beads were washed twice with 2 M urea in 50 mM ABC and then finally washed with distilled water. To elute the biotinylated peptides, elution buffer [80% acetonitrile (Sigma‒Aldrich), 0.2% TFA (Sigma‒Aldrich), and 0.1% formic acid (Thermo Scientific)] was added, and the mixture was incubated at 60°C for 5 min. Each supernatant was transferred to new tubes, and the elution step was repeated 2-3 times. The combined elution fractions were dried using a SpeedVac (Eppendorf). The samples were stored at -20°C or injected for mass spectrometry directly.
LC‒MS/MS analysis of enriched peptide samples Analytical capillary columns (100 cm × 75 µm i.d.) and trap columns (2 cm × 150 µm i.d.) were packed in-house with 3 µm Jupiter C18 particles (Phenomenex, Torrance). The long analytical column was placed in a column heater (Analytical Sales and Services) regulated to a temperature of 45°C. The NanoAcquity UPLC system (Waters, Milford) was operated at a flow rate of 300 nL/min over 2 h with a linear gradient ranging from 95% solvent A (H2O with 0.1% formic acid) to 40% solvent B (acetonitrile with 0.1% formic acid). The enriched samples were analyzed on an Orbitrap Fusion Lumos mass spectrometer (Thermo Scientific) equipped with an in-house customized nanoelectrospray ion source. Precursor ions were acquired (m/z 300-1500) at 120 K resolving power, and the precursor for MS/MS analysis was isolated at 1.4 Th. Higher-energy collisional dissociation (HCD) with 30% collision energy was used for sequencing with an autogel gain control (AGC) target of 1e5. The resolving power for the acquired MS2 spectra was set to 30k with a maximum injection time of 200 ms.
Proteomics
MS data processing and protein identification All MS/MS data were searched by MaxQuant (version 1.6.2.3) with the Andromeda search engine at 10 ppm precursor ion mass tolerance against the Mus musculus proteome database (UP000000589, 55,367 entries, UniProt (www.uniprot.org), 2021-06-22). Label-free quantification (LFQ) and match-between runs were used with the following search parameters for the TurboID experiment: partial trypsin digestion, fixed carbaminomethylation on cysteine, dynamic oxidation of methionine, protein N-terminal acetylation with biotin (+226.0775) labels of lysine residues. A false discovery rate (FDR) of less than 1% was obtained for unique labeled peptides and unique labeled proteins. LFQ intensity values were log-transformed for further analysis, and missing values were filled by imputed values representing a normal distribution around the detection limit. To impute the missing values, first, the intensity distributions of the mean and standard deviation were determined; then, for the imputation values, a new distribution based on a Gaussian distribution with a downshift of 1.8 and width of 0.3 standard deviations was created for the total matrix.
Principal component analysis (PCA) and GO enrichment analysis Perseus (ver. 1.6.2.3) raw values were used to perform the PCA, and each set of experiments was normalized to the interval (0-2) independently and subjected to hierarchical clustering analysis with the following options: Euclidean distance with the option of preprocessing with k-means clustering, 10 maximal number of iterations and preserving order of column constraints. Defined genes within each cluster were subjected to GO enrichment analysis via the DAVID online tool (https://david.ncifcrf.gov/). The background used for GO analysis for each cluster was set as the entire proteome of Homo sapiens.
Intravenous administration of Serpina1a and Serpina1e
Recombinant Serpina1a and Serpina1e with V5 (GKPIPNPLLGLDST) and His tags (HHHHHH)were synthesized with amino acid (aa) sequences as following:
- Serpina1e-V5 (433 aa)
MTPSISWCLLLLAGLCCLVPSFLAEDVQETDTSQKDQSPASHEIATNLGDFAISLYRELVHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQIL
EGLQFNLTQTSEADIHNSFQHLLQTLNRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNFAESEEAKKVINDFVEKGTQGKIVEAVK
KLEQDTVFVLANYILFKGKWKKPFDPENTKQAEFHVDESTTVKVPMMTLSGMLDVHHCSTLSSWVLLMDYAGNATAVFLLP
DDGKMQHLEQTLNKELISKFLLNRRRRLAQIHIPRLSISGNYNLETLMSPLGITRIFNSGADLSGITEENAPLKLSQAVHKAVLTI
DETGTEAAAATVLQGGFLSMPPILHFNRPFLFIIFEEHSQSPLFVGKVVDPTHKGKPIPNPLLGLDSTHHHHHH
- Serpina1a-V5 (433 aa)
MTPSISWGLLLLAGLCCLVPSFLAEDVQETDTSQKDQSPASHEIATNLGDFAISLYRELVHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGL
QFNLTQTSEADIHKSFQHLLQTLNRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNFAESEEAKKVINDFVEKGTQGKIAEAV
KKLDQDTVFALANYILFKGKWKKPFDPENTEEAEFHVDESTTVKVPMMTLSGMLHVHHCSTLSSWVLLMDYAGNAT
AVFLLPDDGKMQHLEQTLSKELISKFLLNRRRRLAQIHFPRLSISGEYNLKTLMSPLGITRIFNNGADLSGITEENAPLKLSQAVHKAVLTIDE
TGTEAAAVTVLQMVPMSMPPILRFDHPFL
FIIFEEHTQSPIFLGKVVDPTHKGKPIPNPLLGLDSTHHHHHH
Recombinant Serpina1a-V5 or Serpina1e-V5 (150 µg/100 µl) were retro-orbitally injected into sedentary C57BL/6 mice for 4 weeks every three days, for a total of 9 times. For the Serpina1 transmission experiments, sedentary mice were injected retro-orbitally with Serpina1e-V5 at 300 µg/100 µl and anesthetized to collect CSF and hippocampal tissues.
Intramuscular injection of AAV9
To investigate whether muscular Serpina1e overexpression induces cognitive enhancement, we delivered a single dose of AAV9-CMV-Serpina1e-T2A-EGFP (VectorBuilder; 1.06 × 10e12 GCs/mouse) into each of the four limbs of C57BL/6 mice. The control mice were injected with the same dose of AAV9-CMV-EGFP (VectorBuilder; 1.07 × 10e12 GC/mouse). Behavioral assessments were performed four weeks after viral infection.
Infusion of recombinant Serpina1e into the hippocampus
To address the direct effects of Serpina1e treatment on the hippocampus, we infused Serpina1e-V5 into the the hippocampus (AP -1.95, ML ±1.20, and DV -1.70; Extended Data Fig. 14e) with the same timeline as systemic injections. A custom dual-guide cannula was designed with a 26-gauge, 7.8 mm pedestal height, 2.4 mm distance and 2 mm distance below the pedestal (RWD). The dual-guide cannula was implanted and covered with a dummy cannula with a 1 mm projection to fit the dual-guide cannula. A total of 100 ng/250 nl of Serpina1e per hemisphere was infused through the implanted cannula for 4 weeks every 3 days at 100 nl/min. The actual infused site in the hippocampus was determined by injecting DiI dye through the implanted cannula when all behavioral tests had concluded.
BrdU labeling
To examine the effects of Serpina1e on hippocampal neurogenesis, 5-bromo-2′-deoxyuridine (BrdU, Sigma‒Aldrich) was injected intraperitoneally at 50 mg/kg into sedentary mice. The BrdU stock was resuspended in PBS at 50 mg/ml and stored at -20°C. The control mice were injected with an equivalent volume of PBS.
To image BrdU-positive cells in the hippocampus, the mice were anesthetized as previously described and transcranially perfused with 4 % paraformaldehyde (PFA, Biosesang) following perfusion with 1x PBS. The brain tissue was stored in 4% PFA for postfixation overnight and then switched to 30% sucrose solution for an additional 48 h in preparation for brain sectioning. Serial coronal sections of the hippocampus (thickness, 40 µm) were collected using a cryostat (Leica, CM3050S) and washed with PBS. All brain sections were blocked with blocking solution (10% normal goat serum, 0.2% Triton X-100 in PBS) for 1 h at room temperature and then incubated in primary antibody solution. All brain sections stained for BrdU were pretreated with 2 M HCl for 30 min at 37°C before blocking. The primary antibody used for immunostaining was a rat anti-BrdU antibody (1:2,500, Abcam), and the fluorescent secondary antibodies were diluted with blocking solution at a concentration of 1:200 and incubated with the sections for 2 h at room temperature. The fluorescent secondary antibody used was a goat anti-rat IgG Alexa Fluor 568-conjugated antibody (Thermo Scientific). Nuclei were fluorescently labeled with DAPI containing mounting solution (Vectashield).
Enzyme-linked immunosorbent assays of BDNF
To measure BDNF levels in the hippocampus, C57BL/6 mice were intravenously injected with Serpina1e for 4 weeks every 3 days and then sacrificed 1 hour after the last injection. Hippocampal tissues were harvested following perfusion with PBS and lysed with lysis buffer (1% Triton X-100, 0.1% Tween 20, 100x P.I.C., and 1x PBS). The BDNF concentration was determined via enzyme-linked immunosorbent assays (Novusbio) according to the manufacturer’s instructions.
Primary cortical neuron culture
Cortical neurons were prepared from the brains of C57BL/6 embryos at embryonic days 16-17. Cortices were dissected in dissection medium (10 mM HEPES in HBSS, Gibco), incubated in 0.25% trypsin-EDTA (Gibco) in a 37°C water bath for 20 min, and then triturated with 2 ml of plating medium (2 mM L-glutamine (Gibco), 0.45% glucose (Sigma‒Aldrich), 10% FBS (Thermo Scientific), 5,000 U/ml penicillin and 5,000 µg/ml streptomycin in MEM (Gibco)). Dissociated cells were filtered through a cell strainer and plated on poly-L-lysine-coated coverslips in 12-well plates (3 × 105 cells/well) in plating media. After one hour, the plates were replaced with maintenance medium (2% B27 supplement, Thermo Scientific), 2 mM L-glutamine, 5,000 U/ml penicillin and 5,000 µg/ml streptomycin in neurobasal medium (Gibco)).
Acquisition and analysis of fluorescence images
Immunofluorescence images were obtained, quantified, and analyzed by an observer who was blinded to the treatment. For neurogenesis analysis via BrdU staining, fluorescence images were acquired by using a STELLARIS 8 microscope (Leica, 40x/1.10 NA) with the pinhole set to 1 Airy unit. Images were taken at the suggested optimal value interval based on magnification and analyzed using ImageJ (National Institutes of Health). The number of BrdU-labeled cells was manually counted in 12 sections per mouse. To analyze neurite morphology, cortical neurons at DIV7 were used. The neurons were imaged using a Leica SP8 confocal microscope (20x/0.75 NA). The images were processed for skeletonization via ImageJ/FIJI, and the total neurite length, branch number, and branch length were analyzed. The skeletonized images were further analyzed via the Sholl analysis plugin in ImageJ/FIJI, which calculates the number of neurite crossings at intervals of 10 µm from the cell body.
Statistics
All the statistical analyses were performed via GraphPad Prism 8 with 95% confidence, and all the values are expressed as the mean ±SEM. One-way ANOVA with Dunnett’s or Sidak’s post hoc tests was used to compare three groups, and unpaired two-tailed Student’s t tests were used to compare two groups. The data in Fig. 6i and 6o were analyzed via two-way ANOVA with Dunnett’s post hoc test. The statistical tests for each experiment are provided in the legends of the respective figures. P values less than 0.05 were considered statistically significant.