Ethical approval. The use of human samples was approved by the Women’s Hospital of Hangzhou Normal University. All the subjects signed a written informed consent. The experimental protocols and procedures related to humans were approved by the Ethics Committee of the Women’s Hospital of Hangzhou Normal University (No. 2022-A-03). All methods were performed in accordance with the relevant guidelines and regulations.
Clinical samples. A total of 5 patients with endometriosis were recruited to provide ectopic and eutopic endometrial tissue when they underwent laparoscopy/hysteroscopy treatment at the Women’s Hospital of Hangzhou Normal University. These samples were obtained during the proliferative phase of the menstrual cycle, which was determined based on preoperative medical history and histological examination. The inclusion and exclusion criteria were as follows: regular menstruation for a period of 28–32 days; and patients who had received hormone therapy and contraception.
Coculture of macrophages and ESCs. Primary ESCs of ectopic and eutopic endometria were cultured as described in previous studies24. The human histiocytic lymphoma cell line U937 was obtained from the cell bank of the Shanghai Academy of Biological Sciences. The medium consisted of RPMI 1640 (Millipore, USA) supplemented with 10% fetal bovine serum (FBS) (Gibco, USA) and a 1% dual-antibiotic penicillin‒streptomycin mixture (PS) (Solarbio, China). The ectopic ESC culture conditions were 10% FBS + 1% PS + DMEM/F12 (HyClone, USA). All the cells were cultured in a humidified incubator containing 5% CO2 at 37 °C.
Exosome extraction and characterization. Specimens of ovarian endometrial tissue were collected, and ectopic ESCs were isolated and cultured with exosome-free serum in primary culture for 48 h. Exosomes were isolated with an exosome isolation kit (Invitrogen, USA). The isolated exosomes were stored at −80 °C as a backup. The purity of the cells was determined by immunofluorescence using vimentin and C-cell keratin factor (CK7).
Transwell assays. Transwell inserts (Corning, 3413) were used to detect cell migration and invasion. The isolated ectopic endothelial mesenchymal stromal cells were cocultured with the U937 macrophage line. Cy3-labeled miR-146a-5p molecules were transfected into mesenchymal stromal cells, which were then cultured in the upper chamber. U937 macrophages that did not express Cy3 were placed in the lower chamber, and red fluorescent Cy3-miR-146a-5p molecules were detected in the lower chamber after 12 hours.
Plasmid construction and cell transfection. The miR-146a-5p mimics (5’-UGAGAACUGAAUUCCAUGGGUU-3′), the miR-146a-5p siRNA (5′- AACCCAUGGAAUUCAGUUCUCA-3′), the miRNA negative control (NC) (5′-GUACGCCAAAAGUUAAACC-3′), the TRAF6 siRNA sequence (5’-GGUGAAAUGUCCAAAUGAAGGUUCAUUUGGACAUUUCACCAU-3ʹ), and the siNC (5’- UUGUACUACACAAAAGUACUG-3’) were obtained from Beyotime (Beijing, China). Cell transfection was performed with Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions.
Quantitative real-time PCR (qRT‒PCR). mRNA levels were detected by qRT‒PCR. Total RNA from cells and tissues was isolated using TRIzol Reagent (Invitrogen, USA) and then converted to cDNA using the Hifair® II 1st Strand cDNA Synthesis Kit (Yeasen Biotechnology, Shanghai) following the manufacturer’s instructions. Quantitative real-time PCR was then performed using Hieff® qPCR SYBR Master Mix (Yeasen Biotechnology, Shanghai) on an ABI 7500 real-time PCR system (Applied Biosystems, Foster, USA) according to the manufacturer’s instructions. qRT‒PCR for miRNA was performed using a stem‒loop RT primer and the Hifair® miRNA 1st Strand cDNA Synthesis Kit (Yeasen Biotechnology, Shanghai) following the manufacturer’s protocols. The 2-ΔΔCt method was used to calculate the relative expression levels of the targeted genes. The internal controls for mRNA and miRNA were GAPDH and U6, respectively. The primers used are shown in Tables S1 and S2.
Western blot analysis. Protein levels were detected by Western blot analysis. Protein samples to be measured were isolated from whole-cell lysates or exosomes using RIPA lysis buffer (Millipore, USA). The total protein content was quantified using a Pierce™ BCA protein quantification kit (Thermo Fisher Scientific, USA). Briefly, the lysates were separated by gel electrophoresis. Proteins were then transferred onto polyvinylidene fluoride membranes and blocked with 5% nonfat milk. The membranes were then sequentially incubated with optimally diluted primary and secondary antibodies. Immunoreactivity signals of the targeted proteins were visualized in a chemiluminescent assay with an enhanced chemiluminescence (ECL) chromogenic substrate (Bio-Rad Laboratories, USA). The antibodies used for Western blotting are listed in Table S3.
Exosome blockade. The ectopic ESCs cultured in vitro were supplemented with the exosome inhibitor GW4689 for culture as the exosome inhibition group, and a blank control group was set up to obtain 40 ml of supernatant and isolate the exosomes. The obtained exosomes were added to each group of macrophages for 24 h, and the macrophages were subjected to RNA extraction and subsequent experiments.
Exosome regulation. Upregulated or downregulated miR-146a-5p molecules were transfected into ectopic ESCs cultured in vitro using mimics/siRNAs to obtain 40 ml of supernatant, which was subsequently isolated to obtain exosomes. In the U937 macrophage culture system, 50 μg of exosomes from each of the above groups were added separately and cultured for 24 h. Macrophage RNA and proteins were extracted for subsequent experiments.
FCM analysis. After treatment with the exosome inhibitor GW4869 or the NF-κB pathway inhibitor EVP4593 at different time points, U937 cells were collected at 48, 24, and 0 h for FCM analysis of macrophage polarization. The markers CD86 and iNOS were used to detect M1 macrophages, and CD163 and CD206 were used to detect M2 macrophages41. The cells were washed twice with PBS, and then, the cell pellet was collected by centrifugation and incubated with iNOS monoclonal antibody (CXNFT), Alexa Fluor 488 (53-5920-80, eBioscience, USA), CD86 monoclonal antibody (PO3), PE (MA516921, eBioscience, USA), CD163 monoclonal antibody (MAC 2-158), Alexa Fluor 488(53-1637-42, eBioscience, USA), CD206 monoclonal antibody (685641), and PE (MA5-23594, eBioscience, USA) at 4 °C for 15–30 min in the dark. After being washed with precooled PBS, the cells were resuspended in PBS for FCM analysis. After incubation, the cells were washed and placed in a Beckman flow cytometer. The data were analyzed with FlowJo software (FlowJo LLC, USA).
Luciferase assay. Luciferase gene reporter gene analysis was used to detect the posttranscriptional regulation of TRAF6 by miR-146a-5p. The luciferase reporter vector pcDNA3.1(+) (Addgene, USA) was used to construct TRAF6 wild-type (WT) or mutant 3'-UTRs. Recombinant reporter vectors with miR-146a-5p mimics or inhibitors were combined with Lipofectamine 2000 Reagent to transduce U937 cells. Luciferase activity was assayed using a Luciferase Assay Kit (Promega, USA).
Statistical analysis. The data were statistically analyzed using GraphPad Prism software (version 9.0.0, USA). At least three independent experiments were performed for each result. The data are presented as the means ± SDs. One-way ANOVA and Student’s t test were applied for the comparisons of mean values. P < 0.05 was regarded as statistically significant.