2.1. Chemicals and reagents
Dapagliflozin was obtained from Sigma-Aldrich (SML2804). NSC228155 (NSC) was purchased from Selleck Chemicals (Catalog No.S8312). Tyrphostin AG-1478 (AG) was purchased from Selleck Chemicals (No.S2728). Bafilomycin A1 (BAF) was purchased from Selleck Chemicals (No.S1413). Erastin 24 was purchased from Sigma-Aldrich (571203-78-6). GAPDH was purchased from Biyuntian Company China (1:5000 AF0006). The drugs were individually dissolved in DMSO (0.1%), and they were introduced into the culture medium 12 hours prior to subjecting it to hypoxia/reoxygenation (H/R). Primary antibodies against GAPDH (1:5,000, AF0006) was purchased from Biyuntian Biotechnology (Shanghai, China); Anti-EGFR antibody (ab52894), Anti-EGFR (phospho Y1068) antibody (1:500, ab40815), Anti-STAT3 antibody [EPR787Y] (ab68153), Anti-STAT3 (phospho Y705) antibody [EPR23968-52] (ab267373), Anti-Sodium/Hydrogen Exchanger 1/NHE-1 antibody (ab67314), Anti-Glutathione Peroxidase 4 antibody [1B4] (ab252833), Anti-NCOA4 antibody (ab86707), and Anti-SQSTM1 / p62 antibody [EPR4844] - Autophagosome Marker (ab109012) were purchased from Abcam (San Francisco, CA, United States). SGLT2 Polyclonal Antibody (Catalog # PA5-101893), SLC7A11 Recombinant Polyclonal Antibody (3HCLC, Catalog # 711589), ACSL4/FACL4 Polyclonal antibody (Catalog: 22401-1-AP), Ferritin Polyclonal Antibody (Catalog # FRTN-101AP) and LC3A/LC3B Polyclonal Antibody (Catalog # PA1-16931) were obtained from Thermo Fisher Scientific (Waltham, MA, United States).
2.2. Animals and Langendorff isolated heart perfusion model
All animal experiments followed the ARRIVE guidelines and complied with the UK Animals (Scientific Procedures) Act 1986 and its related regulations. Ethics approval for all animal experiments was obtained from the Institutional Animal Care and Use Committee of Nanchang University, and the experiments were carried out following the guidelines for the Principles of Laboratory Animal Care and Use of Laboratory Animals published by NIH (NIH Publication, 8th Edition, 2011) 25. The licence number of the ethics committee that approved the study is 0064257. Male Sprague – Dawley (SD) rats weighing 180–230 g were acquired from the Medical Laboratory Animal Center at Nanchang University (Nanchang, China). Healthy adult male Sprague-Dawley rats (n = 8 each) were anesthetized with 3% sodium pentobarbital (50 mg/kg) followed by intraperitoneal injection of heparin (1000 IU/kg). After midline thoracotomy, the heart was excised within 1 minute and immediately immersed in 4°C Krebs-Henseleit (K-H) buffer to remove residual blood. Subsequently, the heart underwent retrograde perfusion at a constant pressure of 80 mmHg using a Langendorff apparatus equipped with a modified Krebs-Henseleit (MKH) solution. A mixture of 95% oxygen and 5% carbon dioxide was continuously bubbled through the K-H buffer, which was perfused into the heart at the same pressure to ensure optimal oxygenation. The temperature of the perfusion system was tightly controlled at either 37 ± 0.2°C or 34 ± 0.2°C using a circulating water bath, with specific reference to the study by Koyama et al 26. All hearts were randomly divided into four groups: Sham, no treatment; Dapa, subjected to Dapa post-treatment at a concentration of 5 µM in Supplementary Fig. 1; IRI; IRI + Dapa. According to our previous methods 8, hemodynamic indices ± dp/dtmax; left ventricular peak pressure (LVSP) were measured to assess cardiac function. A biosignal acquisition and processing system (U/4C501H Med Lab, Shanghai, China) was used to monitor and record the left ventricular end-diastolic pressure (LVEDP). at equilibrium for 30 min (T0), 30 min (T1), 60 min (T2), 90 min (T3), and 2 h (T4).
2.3. Cell culture
To isolate neonatal rat ventricular myocytes (NRVMs), we followed a procedure involving neonatal SD rats aged 1–3 days (Supplementary Fig. 2). After SD rats were anesthetized with 3% sodium pentobarbital (50 mg/kg) by intraperitoneal injection, cervical dislocation execution followed, the hearts were subjected to a wash with ice-cold Hank's Balanced Salt Solution (HBSS) to eliminate blood. Subsequently, the hearts were finely diced into small fragments and subjected to digestion at 37°C for 30–35 minutes, utilizing the Pierce primary cardiomyocyte isolation kit. This process yielded a single-cell suspension, from which approximately 10–20 × 106 dissociated cardiomyocytes were obtained, originating from 10 neonatal rat hearts. The isolated cardiomyocytes were then seeded into either 6-well plates at a density of 2 × 105 cells/well or 96-well plates at a density of 5 × 104 cells/well. Following a 3 - day cultivation period, the cardiomyocytes were prepared for a variety of experiments. When NRVMs reached 80% confluence, the cells were treated with H/R to mimic the IRI model in vitro. Then, the cells were randomly divided into six groups: HR + Veh, no treatment; HR + Dapa: subjected to Dapa at a concentration of 5 mM; HR + NSC (EGFR agonist); HR + Dapa + AG (EGFR inhibitor); HR + Dapa + Baf (autophagy inhibitor): Baf; HR + Dapa + Era (ferroptosis activator).
2.4. Myocardial infarction size measurement
At the end of reperfusion, the hearts were promptly removed from the Langendorff perfusion device and rapidly frozen at − 80°C for 5 min. Subsequently, 5–6 pieces of heart tissue, each 2-mm-thick, were prepared using a heart cutter and immersed in 1% triphenyltetrazolium chloride (TTC, No. T8877, Sigma, USA) for uniform staining. For accurate results, the staining was carried out in a light-free environment at a constant temperature for 20 min, following which, the tissue pieces were washed with phosphate-buffered saline (PBS) buffer and fixed in 10% formalin for 24 h. Consecutively, the infarcted area appeared off-white, while the non-infarcted area was brick-red in color. The left ventricular infarction volume and the total volume of the left myocardium (myocardial infarction size) were measured using Alpha View gel image software to quantify and compare the area of infarcted tissue and whole myocardial tissue.
2.5. Hematoxylin and eosin (H&E) staining
Myocardial tissue obtained from rats was fixed in 10% paraformaldehyde and subsequently embedded in paraffin. The tissue was then cut into 4 µm sections. These sections underwent dewaxing with xylene twice for 5 minutes each and hydration with 95% ethanol. Following this, hematoxylin was applied for 10 minutes, followed by rinsing with tap water and differentiation in 1% HCl ethanol for 10 seconds. Finally, the sections were stained with 5% eosin for 1–3 minutes. After staining, dehydration was carried out with ethanol for 25 minutes, followed by dewaxing with xylene. The sections were then sealed and dried with neutral resin before observation under a Leica IX71 microscope (×200).
2.6. LDH activity assay, CK-MB and cTnI measurement
Based on a previous study, cardiac lactate dehydrogenase (LDH) activity was measured using an LDH assay kit (Nanjing Jiancheng Biotechnology, China) following the manufacturer’s instructions. LDH release was quantified as units per liter (U/L). After 2 hours of reperfusion following ischemia, left ventricular tissue was harvested. A 10% tissue homogenate in normal saline was centrifuged at 4°C at 3,000 rpm for 15 minutes to obtain the supernatant. Creatine kinase-MB (CK-MB) and cardiac troponin I (cTnI) levels were assessed using commercial kits from Nanjing Jiancheng Bioengineering Institute according to the manufacturer’s instructions, and results were expressed as units per liter (U/L).
2.7. Cell viability
The cell viability of NRVMs was assessed using the 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT) assay, all steps were performed in strict accordance with the instructions, as described previously 8.
2.8. Electron microscopy imaging with parallel Flameng’s score
The cells were fixed in 3% glutaraldehyde and 1% osmium tetroxide, following which they were dehydrated with acetone. Subsequently, the samples were embedded in Epon812 resin and cut into approximately 50-nm-thick slices. To enhance the contrast for imaging, the sliced samples were stained with uranyl acetate and lead citrate. Images were acquired under a JEM-1400PLUS transmission electron microscope. The mitochondria scores were based on the degree of mitochondrial damage. Each mitochondrion was individually scored on a scale of 0–4 (higher scales indicate more severity), reflecting the extent of damage. Finally, the average score of all mitochondria in a given sample was calculated to obtain flameng’s score for that specific sample.
2.9. Evaluation of mitochondrial ROS (mROS)
The mROS were assessed using a MitoSOX™ Red mitochondrial superoxide indicator (YEASEN, Shanghai, China), following the manufacturer’s instructions. 4T1 cells were seeded onto coverslips in a 24-well plate. The cells from all experimental groups were incubated with a 5 µM MitoSOX™ reagent at 37°C for 10 min in the dark. Following the incubation period, the cells were washed three times with warm HBSS. The intensity of ROS 20 was then detected using a fluorescent microscope.
2.10. Measurement of the mitochondrial membrane potential (MMP)
Cellular MMP was assessed using tetramethylrhodamine, methyl ester (TMRM) staining. Pre-diluted TMRM dye was added to the cells following established protocols, adhering to the manufacturer's recommended concentration and incubation times. Subsequently, stained cells or tissues were examined under a fluorescence microscope to visualize TMRM fluorescence distribution and intensity. Quantitative analysis of fluorescence images was conducted using image analysis software to quantify alterations in MMP. The experimental methods for these MMP assessments were based on the research conducted by Salie et al 27.
2.11. Mitochondrial respiratory oxygen consumption rate (OCR) detection
The OCR was measured following the instructions of the Seahorse XF Cell Mito Stress Test Kit (catalog number 103015-100, Agilent, Delaware, USA). Briefly, one day before the experiment, 1.5 × 104 cells were seeded into each well of Seahorse Xfe96-well plates and incubated at 37°C under 5% CO2 for 24 h. The sensor cartridge was hydrated overnight in a CO2-free incubator at 37°C. Seahorse XF DMEM was prepared as follows: 10 mM glucose, 2 mM glutamine, and 1 mM sodium pyruvate. Metabolic regulation drugs were configured at the specified concentrations: 1.5 µM oligomycin for the A dosing hole, 2 µM fluorocarbonyl cyanide phenylhydrazone (FCCP) for the B dosing hole, and 5 µM rotenone/antimycin A for the C dosing hole. Finally, the mitochondrial breathing program of Seahorse Xfe96 Analyzer (Agilent, Delaware, USA) was selected to detect and analyze cellular mitochondrial respiration and function.
2.12. Bioinformatics analysis
The public dataset GSE4105 from the gene expression synthesis (GEO, https://www.ncbi.nlm.nih.gov/geo/) was used to obtain the genes of IRI [23193258]. Ferroptosis-related genes (FRGs) were acquired from the FerrDB website [36305834], and the targets of Dapa were predicted via Swiss target prediction [24792161]. To investigate the expression difference of genes in IRI and determine the expression at the mRNA level, we conducted differential expression analysis using the “limma” package in R software to identify the differentially expressed genes (DEGs) in GSE4150 between IRI and normal groups [25608792]. The absolute values of log2 fold-change (|log2FC|) > 1 and P-value < 0.05 were used to define the threshold of DEGs. To visualize the results of differential expression analysis, the “ggplot2” package in R software was used to create a volcano plot. Finally, the intersection candidates of DEGs, FRGs, and targets of Dapa were regarded as hub indicators. The R software package “clusterProfiler” was used for Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis and to obtain the Gene Ontology (GO) enrichment results of biological processes, cellular components, and molecular function [23740750].
2.13. Western blot
To extract total protein from each group of cells, the following protocol was followed: Cells were lysed on ice using RIPA lysis buffer for a duration of 10 minutes. The lysate was then centrifuged at 13,000 × g for 10 minutes to facilitate protein extraction. The protein concentration was determined using a BCA assay kit. To denature the protein, it was mixed with loading buffer and boiled at 100°C for 5 minutes. Protein samples, each containing 30 µg of protein, were separated using 10% SDS‒PAGE gel electrophoresis. The separated proteins were subsequently transferred to polyvinylidene fluoride (PVDF) membranes at a constant current of 250 mA. The PVDF membrane was blocked with 5% skimmed milk at room temperature for 1 hour. The membrane was then incubated overnight at 4°C in a shaker with the primary antibody. For the subsequent step, goat anti-rabbit or mouse IgG was utilized as the secondary antibody and incubated with the membrane at room temperature for 2 hours. Finally, the membranes were exposed to the ECL color solution, and the chemiluminescent signals were captured using a chemiluminescence imager.
2.14. Iron measurements
Cells (2×106) were rapidly homogenized in iron assay buffer using an Iron Assay kit (Colorimetric, ab83366, Sigma Aldrich). Following the procedure, the solution was subjected to centrifugation at 13,000 × g for 10 minutes at 4°C in order to eliminate insoluble material. Subsequently, the absorbance of the solution was measured at a wavelength of 593 nm using a microplate fluorometer from Bio-Rad Laboratories, Inc.
2.15. Myocardial histopathological staining
For immunohistochemical (IHC) staining, the adjacent slice was used, and a heat-induced antigen retrieval step was employed. All tissue sections were deparaffinized and hydrated, and endogenous peroxidase activity was blocked using hydrogen peroxide. The negative control was treated with phosphate-buffered saline (PBS) instead of the primary antibody. After washing with PBS, the slides were incubated with 3,3′-diaminobenzidine tetrahydrochloride (DAB, ZSGB-BIO, Beijing, China) to visualize the antigen-antibody complexes. Finally, the tissue sections were observed using a light microscope (LM, BX51, Olympus Co., Japan).
2.16. Immunoprecipitation (IP) assay
Briefly, an equivalent of 5 µg of anti-NCOA4 or anti-FTH1 antibody was incubated with cell lysates at 4°C overnight. The samples were incubated with protein A agarose beads with rotation at 4°C for 3 h. Subsequently, the immune complexes were isolated by centrifugation at 3,000 rpm for 5 minutes, washed three times with lysis buffer, and incubated at 95°C for 5 min. The IP complexes were subjected to Western blot analysis using specific primary antibodies.
2.17. Cell apoptosis detection
Apoptosis in the myocardium and NRVMs was assessed using TdT- mediated biotinylated nick end Labeling (TUNEL) staining. Rat myocardial tissue was fixed with 4% paraformaldehyde at 4°C, dehydrated with ethanol, embedded in paraffin for sectioning, and washed twice with PBS (pH 7.35). Following the kit’s instructions, the TUNEL reagent was added to the tissue sections, and the mixture was incubated at 37°C for 1 h in the dark. 4,6-diamidine-2-phenylindole (DAPI) was used to stain the nuclei. Then, the sections were incubated with DAPI at room temperature for 10 min and rinsed twice with PBS. The apoptotic cells were detected under a fluorescent microscope. In TUNEL staining, apoptotic cells showed green fluorescence, while the nuclei exhibited blue fluorescence due to DAPI staining.
2.18. Statistical analysis
Data were expressed as means ± SEM. All experimental data were analyzed by using one-way analysis of variance (ANOVA) followed by Tukey multiple comparison test. P values < 0.05 were considered statistically signifcant. Statistical analysis was conducted using GraphPad Prism software (version 9.5).