An in-depth understanding of carbon dynamics and ecosystem productivity is essential for conservation and management of different ecosystems. Ecosystem dynamics and carbon budget are assessed by estimating Net Ecosystem Production (NEP) across different global ecosystems. An ecological productivity assessment of forest and floating meadow ecosystems in Keibul Lamjao National Park (KLNP), Manipur, North East India was conducted using the multi-criteria decision-making process namely, Grey Relational Analysis (GRA). The analysis was performed on 24 selected criterions classified either as "higher-the-better" or "lower-the-better" based on their degree of influence on the carbon budget. Floating meadows exhibited a higher production of aboveground and belowground biomass and a higher total mortality and decay. Furthermore, the study found that floating meadows exhibited a higher soil organic carbon (SOC) and net soil organic matter (SOM) than the forest ecosystem. The forest ecosystem showed higher total respiration (RT), heterotrophic respiration (RH), and autotrophic respiration (RA) than floating meadows. Floating meadows exhibited a higher net primary productivity (NPP) of 616.49 ± 33.87 gCm⁻²yr⁻¹ than the forest ecosystem, which has a NPP of 566.64 ± 65.26 gCm⁻²yr⁻¹. Similarly, Floating meadows have higher NEP (495.25 ± 36.46 gCm−²yr⁻¹) than forest ecosystems (418.39 ± 65.76 gCm−²yr⁻¹). These characteristics have a significant influence on the carbon budget in floating meadows as compared to forest ecosystems, as shown by larger values of Grey Relational Coefficient (GRC) in GRA. The Floating Meadows Ecosystem (0.82) obtained 54.72% percentage gain in GRG value with the forest ecosystem (0.53). This study might help in improving KLNP and other adjutant areas for conservation and management policies from the vital information given on the importance of wetlands in carbon dynamics and ecosystem productivity.