Animals
Double transgenic B6.Cg-Tg APP/PS1 (APPswe, PSEN1dE9) 85Dbo/J (stock#034829-JAX) and isogenic parent wild-type C57BL/6J (stock# 000664) mice, and were obtained from the Guangdong Province Experimental Animal Center. Each cage housed three to four mice. There were 10 groups and each 12 mice (6 males and 6 females) for each type, which were euthanized at 1, 3, 6, 9, and 12 months using pentobarbital sodium injection. We recorded survival status from May 2021 to January 2022. Brain tissue, serum, and cerebrospinal fluid (CSF) samples were collected from each mouse. All animals were housed in a pathogen-free facility with a 12-hour light/dark cycle and free access to food and water.
Tissue collection
After an 8-hour fasting, mice were anesthetized with 1% pentobarbital sodium, and CSF was collected from the fourth ventricle using 20 µl glass capillaries. We also collected 100 µl of heparin-anticoagulated blood and 800 µl of non-anticoagulated blood from the heart. The CSF, serum, and plasma were stored in -80°C freezers, while mouse weights and organ weights were recorded. Brain organ coefficient is defined as mouse brain weight divided by body weight ×100. Based on Liu et al.'s l report, brain samples were collected for fixation and freezing [22].
Protein extraction
For each sample, the tissue is weighed and tenfold to add RIPA, such as 30mg of cortex to 300µl PIRA buffer supplemented with protease and phosphatase inhibitors (Beyotime, P0013C) using a grinder (50 Hz) for 45 S, repeated three times at -20℃. The homogenate was then centrifuged at 13,000×g for 20 minutes at 4℃, and the resulting supernatant was transferred to a new 1.5 ml centrifuge tube. The protein supernatants were stored at -80℃ for ELISA detection.
ELISA quantitation
ELISA quantitation for Aβ peptides, p-tau in the cortex and CSF. Commercial ELISA kits for Aβ1-40 (cat. No. E-EL-M3009) and p-tau (cat. No. E-EL-M1289c) were purchased from Elabscience (Wuhan, China), and for Aβ1-42 (cat. No. E1151m) from EIAab (Wuhan, China). CSF samples were diluted 20–30 times according to the manufacturer’s protocols for quantifying Aβ1-42, while cortical protein samples were diluted 2 times for the analysis of Aβ1-42, Aβ1-40, and p-tau. Serum and cortical protein samples were diluted 2 times and analyzed using commercial ELISA kits (TNF-α cat. No. EMC102a, IL-1β cat. No. EMC001b, IL-6 cat. No. EMC004) purchased from NeoBioscience (Shenzhen, China) to detect inflammatory cytokines (IL-1β, TNF-α, and IL-6) in serum and cortex.
Behavior experiments
Mice were subjected to an open field test to evaluate behavior, with each group of 10 mice allowed to freely explore a 40 cm × 40 cm × 40 cm box for 5 minutes [23]. The motion that include total movement trail, time spent in the center, speed, and number of entries into the center, were collected using the TopScan system (Clever Sys Inc.; Reston, Virginia, USA). Kraeuter et al. used the Y-Maze test, which consists of three 30 cm arms arranged at 120° angles, to evaluate spatial memory and working memories in mice [24]. Spatial memory in mice was tested using spontaneous alternation, where mice freely explored all three arms for 8 minutes out of curiosity. Working memories are those that endure for long time periods and need training 10 minutes and testing after 2 hours [25].
%Alternation = (Number of alternations / [total number of arm entries – 2])×100
Immunofluorescence Staining
Immunofluorescence staining was performed following previously described methods [26]. Frozen 10 µm sections were thawed at room temperature for 20 minutes, washed with PBS for 5 minutes, and incubated with 5% Bovine Serum Albumin (BSA) and 0.05% TritonX-100 in 1× PBS for 60 minutes at room temperature. They were then incubated overnight at 4℃ with primary antibodies (Aβ1-42, Abcam, cat. No 201061; CD31, BD, cat. No 550274; vWF, proteintech, cat. No 66682-1-1g; GFAP, Cell Signaling, cat. No 80788; NeuN, Cell Signaling, cat. No 24307; VEGFR2, Cell Signaling, cat. No 2479) diluted 1:250 in PBS with 1%BSA. After washing three times with PBS, sections were incubated with secondary antibodies (1:500, Invitrogen) at room temperature for 2 hours, followed by 5-minute DAPI staining, and imaging using a BX63 fluorescence microscope (Olympus, Japan).
Quantification of micro-vessels
CD31 and vWF fluorescence staining on frozen cortex sections evaluated cortical micro-vessels. AngioTool software analyzed parameters such as vascular network area, vessel count, length, density, lacunarity, and branching index (branch points per unit area), assessing sprouting activity [27]. The software (Home - Home - CCR Wiki (cancer.gov)) was used to analyze the capillaries with the adjustment for vessel diameter to 5-100 µm and background removal in our study.
RNA-Seq of mouse capillary
Capillary from three randomly selected 1-month-old APP/PS1 mice and three age-matched WT mice in the cortex were isolated for transcriptomic profiling using previously described methods [28, 29]. Total RNA was extracted using the miRNeasy Mini Kit (cat. No 217004) and sequenced on Illumina NovaSeq6000 sequencers in PE150 mode at Shanghai Biotechnology Corporation. Differentially expressed genes (DEGs) were analyzed using the DeSeq2 package, followed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses using R packages.
RNA-Seq in AD Patients
GSE203206 dataset was downloaded from the Gene Expression Omnibus (GEO), which was generated from Brodmann Area 17 of the occipital lobe tissue in brain collected from 8 non-demented control (NDC) and 40 AD patients Participants were classified based on cognitive tests: MMSE, BIMC, and Mattis' DRS. Differential expression analysis was done with GEO2R, identifying significant genes with p < 0.05.
Aβ1−42 Oligomers on cells
Mouse brain microvascular cells pericytes that is the immortalized cells isolated by our group and endothelial cells (bEnd.3) was purchased from Cellcook Biotech Corporation (cat. No CC9006). They were cultured in DMEM high glucose (Gibco, USA) with 10% FBS and 1% antibiotics (streptomycin, penicillin, and fungitin) in a humidified incubator with 5% CO2 at 37°C. During experiments, cells were treated with Aβ oligomers at 70% low density. For the preparation of Aβ derived diffusion ligand (ADDL), refer to Chromy BA et al [30]. Brief, the solid Aβ peptide dissolved in cold hexafluoro-2-propanol (HFIP) and incubated at room temperature for 1 hour, evaporating HFIP overnight in a fume hood, and storing the peptides as membranes at -80°C. The film dissolved in anhydrous DMSO to 1 mM, then diluted to 500 µM with phenol-free red F12 and aged for 36 hours at 4°C. The supernatant containing soluble oligomers were obtained after centrifugation at 13,000 rpm for 15 minutes at 4°C. Cells were treated with Aβ1−42 Oligomers at different concentrations (0.1µM, 1µM, 2µM, 5µM, 10µM) for 24 hours, and 0µM dissolved in DMSO as control. Only immortalized cell of pericytes treated with Aβ oligomers were seeded in a 48-well plate with 110 µl of matrix gel (cat. No 354234) and observed for angiogenesis after 8 hours with AngioTool to evaluate the results.
RNA extraction and quantitative PCR
Frozen hippocampus (n = 3) and cortex (n = 3) tissues (25 mg each) were homogenized in 500 µl Trizol (Invitrogen, cat. No 15596018) mash three cycles of 30 S for 50 Hz at -20°C in a grinder, and RNA extraction from pericytes and endothelial cells treated with Aβ1−42 oligomers followed similar methods. The homogenates were used for total RNA extraction and cDNA Kit (Takara, cat. No RR047A), following the manufacturer's instructions. The relative mRNA levels of GFAP, Iba1, CD31, IL-1β, IL-6, TNF-α, TGF-β2, Caspase-1, Caspase-3, VEGFA, and VEGFR2 genes were analyzed using quantitative PCR (qPCR) on an ABI 3421 Real-Time PCR system (ABI, Commonwealth of Massachusetts, USA). The qPCR reaction conditions and components followed the methods outlined in the study by Sun et al [31]. β-actin served as the internal reference gene, and the primer sequences were adapted from Liu et al.'s study [32]. All primer sequences are provided in Supplementary Table 1.
Statistical analysis
All data were analyzed using SPSS 22.0 and visualized with GraphPad Prism 8.0. Two-way ANOVA with Bonferroni post-tests was used for group comparisons, and one-way ANOVA assessed AD-related markers (Aβ1-42, Aβ1-40, p-tau) in APP/PS1 groups. Linear regression was used to evaluate the association between the CSF Aβ1-42 and the cortex Aβ1-42. Survival data were analyzed using Kaplan-Meier curves, abnormal data were assessed nonparametrically, and statisticians were blinded to the experimental results. A p-value of < 0.05 (two-sided) indicated statistical significance. "*" denotes comparison between two groups of mice with the same age, and "#" denotes comparison between APP/PS1 mice at different ages. *p < 0.05, **p < 0.01, ***p < 0.001. #p < 0.05, ##p < 0.01, ###p < 0.001.