Collecting and Isolation
Two collections of Pleurotus djamor var. fuscopruinosus were collected from Nakhone Si Thammarat Province, southern Thailand. Pure cultures were isolated from fresh basidiomata by cutting tissue context using sterile forceps plated on Petri dishes with potato dextrose agar (PDA) and incubated at room temperature for 2 weeks. Pure cultures were deposited at Mae Fah Luang University.
Morphology Study
Macromorphology notes were followed by Largent (1986), and the colour notes of the mushrooms were from Kornerup and Wanscher (1978). Fresh basidiomata were dried in a hot air dryer at 40–50°C for 24 hours or until the samples were completely dried and kept in zip-locked plastic bags to deposit the Herbarium of Mae Fah Luang University (MFLU). The micromorphology was examined from dry specimens using standard procedures and terms Vellinga (2011). The examination was carried out with chemical reactions of water, 3–6% KOH, and Congo red. All microcharacters were photographed, measured, and drawn using a compound microscope Nikon Eclipse Ni. 25 basidiospores were measured from the inside view. The notation [50, 3, 3] indicated that the measurement was made on 50 basidiospores in three samples from two collections. At least 25 basidia, cheilocystidia, terminal cells, and pileipellis hyphae were measured per collection of each species. The dimensions of the microscopic structures are given as follows: (a–)b–c–d(− e), in which “c” represents the average, “b” the fifth percentile, “d” the 95th percentile and the minimum and maximum values “a” and “e” are shown in parentheses. “Q” the length/width ratio of the spores in the inside view was calculated. The dried fruiting bodies were deposited in the Herbarium of Mae Fah Luang University. A record was added to the GMS mushrooms database [28].
DNA extraction, PCR amplification, and sequencing
Genomic DNA was extracted from dry specimens using the Biospin Fungus Genomic DNA Extraction Kit (Bioer Technology Co., Ltd., Hangzhou), by following the manufacturer’s instructions. The ITS and nrLSU regions were amplified by polymerase chain reaction (PCR). For amplification of ITS, the primers ITS1-F and ITS4 [29, 30], the nrLSU with primers LR0R and LR5 [30, 31]. PCR amplification, purification and sequencing of ITS and LSU was used using PCR primers by Shanghai sangon Biological Engineering Technology & Services Co., Ltd. The PCR cycle for ITS and LSU was set up: 3 mins at 94°C; 35 cycles of 30 s at 94°C, 40–50 s at 50–55°C, 1 min at 72 C; 10mins at 72°C.
Sequence alignment and phylogenetic analysis
Sequences of Pleurotus species were checked using Bioedit Sequence Alignment Editor version 7.0.9.0, and contigs were assembled using SeqMan (DNAstar, Madison, WI, USA). The quality of each sequence of Pleurotus species was checked and compared in the GenBank database (http://www.ncbi.nlm.nih.gov/genbank/) to verify similarity with Pleurotus sequences from other countries. The reference sequences of GenBank consisting of an outgroup are indicated in Table 1. The ITS and nrLSU datasets were aligned using MAFFT v.7 [32] in online access (http://mafft.cbrc.jp/alignment/server/), and the alignment data sets were performed in TrimAl to eliminate ambiguously aligned positions [33].
The combined data set of ITS-LSU were analysed in Bayesian inference (BI) and Maximum likelihood (ML) analyses. All analyses were done on the web server CIPRES science Gateway version 3.3 [34] online (https://www.phylo.org/). Maximum likelihood (ML) phylogenetic tree inference was performed using RAxML-HPC2 on XSEDE version 8.2.12 [35]. The dataset of two gene regions was analysed in a single analysis (one for each gene) and combined. GTR + I + G for ITS. BI analyses were selected the best model from jModelTest2 in XSEDE version 2.1.6 [36]. BI analyses were performed in MrBayes on XSEDE version 3.2.7a [37]. Two runs of five simultaneous MCMC chains will be run for 1,000,000 generations with trees and parameters sampled every 1,000th generation, for a total of 10,000 samples. The remaining samples will be used to calculate posterior probabilities (PP) and the majority rule consensus tree. Trees will be viewed using FigTree v1.4.0. The new sequences were deposited in GenBank.
Table 1
The GenBank accession numbers and geographical origins of the taxa were used in the phylogenetic analysis.
Species names | Specimen/culture | Locality | GenBank Accession Numbers |
ITS | nLSU |
Pleurotus abalonus | HKAS81197 | China | MN546043 | – |
P. abieticola | HKAS46100 | China | KP771695 | KP867909 |
P. australis | ICMP 21585 | New Zealand | MH395977 | MH396002 |
P. calyptratus | P67 | South Korea | KY962483 | KY963067 |
P. calyptratus as P. djamor f. calyptratus | HMAS 63355 | – | AY562495 | AY562496 |
P. citrinopileatus | HKAS85965 | China | KP867920 | KP867911 |
P. cornucopiae | CBS 283.37 | – | MH855911 | MH867415 |
P. cystidiosus | IFO30607 | Japan | AY315778 | – |
P. djamor | FUM-085 | Iraq | KY951474 | – |
P. djamor | CC055 | Mexico | KX573926 | – |
P. djamor | 1092014J | Pakistan | KX056435 | – |
P. djamor | rxsbn-473 | China | MW374226 | – |
P. djamor | SCK21 | Thailand | MK026938 | – |
P. djamor | Brazil | MBsn | KF280325 | – |
P. djamor var. djamor | ABM464683 | Malaysia | KC582635 | – |
P. djamor var. fuscopruinosus | MFLU24-0015 | Thailand | PP192013 | PP192011 |
P. djamor var. fuscopruinosus | MFLU24-0016 | Thailand | PP192014 | PP192012 |
P. djamor var. roseus | ABM1049204 | – | KC582640 | – |
P. dryinus | HKAS94448 | Finland | MN546046 | – |
P. eryngii | CCMSSC00480 | China | KX836350 | – |
P. euosmus | CBS 307.29 | China | EU424298 | – |
P. ferulaginis | HIK133 | Italy | KF743826 | HM998795 |
P. flabellatus | P35 | South Korea | KY962451 | KY963035 |
P. flabellatus | ACCC51447 | China | EU424303 | – |
P. fossulatus | P146 | South Korea | MG282485 | MG282545 |
P. fuscosquamulosus | LGAMP50 | Greece | AY315789 | – |
P. giganteus | MFLU14-0637 | Thailand | KP135559 | – |
P. levis | DPL6135 | USA | KP026244 | – |
P. nebrodensis | Italy UPA6 | UPA6 | HM998816 | – |
P. ostreatus | TENN 53662 | Austria | AY854077 | AY645052 |
P. opuntiae | MA-PO7 | Mexico | MK757594 | – |
P. ostreatoroseus | P94 | South Korea | MG282434 | – |
P. parsonsiae | ICMP 18169 | New Zealand | MH395975 | MH396000 |
P. placentodes | HKAS51745 | China | KR827693 | KR827695 |
P. populinus | P70 | South Korea | KY962486 | KY963070 |
P. pulmonarius | HKAS86009 | China | KP867918 | KP867906 |
P. purpureo-olivaceus | ICMP 20713 | New Zealand | MH395976 | MH396001 |
P. salmoneostramineus | P60 | South Korea | KY962476 | KY963060 |
P. smithii | IE74 | Mexico | AY315779 | – |
P. tuber-regium | CBS 850.95 | Nigeria | MH862563 | MH874190 |
P. tuoliensis | CCMSSC03105 | Xinjiang, China | KU612906 | – |
Hohenbuehelia atrocoerulea | AMB 18080 | Hungary | KU355304 | KU355389 |
H. petaloides | AMB 18088 | Italy | KU355346 | KU355402 |
Preliminary cultivation trial
Effect of grain media for spawn production
The six different grains were used to find the best spawn production: Hordeum vulgare (barley), Zea mays (corn), Oryza sativa (paddy rice), Pennisetum glaucum (L.) R. Br. (millet), Oryza sativa L. (rice berry), Sorghum bicolor (sorghum). Each spawn grain will be washed and soaked overnight, the water will be drained, the mixture will boil for 10–15 minutes and leave to cool. The grains were placed in 30 × 140 mm test tubes to approximately 120 cm depth, autoclaved at 121°C for 15 minutes, and left to cool. Tubes containing the same grain length were inoculated with five mycelial plugs of approximately 5 mm diam. from the mycelia colony on PDA plates under aseptic conditions and test tubes were incubated at 28 \(\:\text{℃}\:\)under dark conditions. The length of the linear mycelium was measured every 2 days for 10 days to calculate the growth rate. All analyses were carried out in five replicates.
Effect of different agricultural wastes on mycelium growth
Ten agricultural wastes including banana leaves, sugarcane bagasse, coconuts sell fibre, corn cob, coffee ground, corn husks, mixed leaves, pine apple, rice husks, rice straw, sawdust, substrate material was mixed with 9% rice bran, 1% sugar, 1% calcium carbonate, 0.03% ammonium chloride, 0.03% magnesium sulfate and 0.036% monopotassium phosphate. Mix the substrate with the supplements and fill with distilled water. Each Petri dish was placed with 20 g of a mixed substrate with 5 replications per substrate. Sterilised in an autoclave at 121 ° C for 1 hour and left to cool, the Petri dish of each substrate was inoculated with a 10 mm mycelium disc under aseptic conditions and incubated at 28 ºC under dark conditions. Diameter measurements for mycelium proliferation every 2 days for 10 days. The protocol follows [38, 39].
Fruiting test
The best substrate from above was selected for the fruiting test. Rubber sawdust was used as the main substrate mixed (w/w) with 9% rice bran, 1% sugar, 1% calcium carbonate, 0.03% ammonium chloride, 0.03% magnesium sulfate, and 0.036% monopotassium phosphate [39]. All substrate supplements were mixed manually with 70% moisture. The mixture (800 g) was packed into polypropylene bags and then capped with a plastic ring and lid. Sawdust bags were sterilised at 121 ° C for 1 hour. After the temperature cooled, the spawns were inoculated in the sawdust bags and, appropriately, 50 g of mushroom spawn was inoculated in the sawdust bags under aseptic conditions. The bags were incubated in darkness at 25 ± 1°C, and 60–75% relative humidity. All analyses were carried out from five replicates. After the mycelial had completely colonised the bag substrates, they were removed from the shelves and opened at the ends. The bags were kept at the mushroom house with 70 to 80% humidity. Watering was carried out two times a day using a tap water sprayer until the fruiting bodies had fully developed.
Statistics Analysis
The mycelia growth rate in the spawning production and the substrate test of the mushroom strains were determined, and the data analysis was statistically in terms of the variance of means using Tukey’s test with a significance of P < 0.05. Yield data and biological efficiency (B.E.) were recorded. Yield data mean the total weight of fresh mushroom per kilogramme of substrate [40, 41], biological efficiency (B.E.) means the weight of harvest/weight of dry substrate) x 100% [42, 43].
Determination of the nutritional content
The basidiomata of P. djamor var. fuscopruinosus were the proximate analysis. Fresh basidiomata were dried at 50ºC for 24 hours or until completely dried and powdered using a blender. Proximate value was optioned on the ash, carbohydrate, fat, fibre, moisture, and protein. The determination of ash, fat, fibre, and moisture was followed by the AOAC (Assoc. of Analytical Chemistry). The protein content of the mushroom samples was determined using the Kjeldahl method following [44] and the conversion factor used for nitrogen to protein was 6.25. Carbohydrate was calculated by following equation [45]:
Carbohydrate (g/100 g sample) = 100- \(\:\frac{\:(\text{m}\text{o}\text{i}\text{s}\text{t}\text{u}\text{r}\text{e}+\text{f}\text{a}\text{t}+\text{p}\text{r}\text{o}\text{t}\text{e}\text{i}\text{n}+\text{a}\text{s}\text{h}+\text{c}\text{r}\text{u}\text{d}\text{e}\:\text{f}\text{i}\text{b}\text{e}\text{r})\:\text{g}}{100\:\text{g}}\)
Crude Extraction
Mycelium of P. djamor var. fuscopruinosus was subcultured on potato dextrose agar using agar plugs and grown in 100 plates and incubated at 28 ºC for 4 weeks or until the mycelium was covered with plate media. Agar plates with mycelium cultures were soaked with 30 mL HPLC grade ethyl acetate (EtOAc, CH3 − COO − CH2 − CH3), methanol (CH3OH) using a homogeniser (Ultra-turraxP®), and water (H2O). The process was carried out in three replicates. The mycelium of our mushroom strains (mycelium grown on media) were soaking three days for the first extraction of each solvent. The liquid layer and the solid layer were separated. The solid layer was added solvents again and the mixture was soaked for three days each time for the second and third extractions. Subsequently, the solid layer was discarded. The liquid layers (EtOAc extracts) were pulled together into the preweighed vial. Then it was air-dried to let the liquid component evaporate. The remaining solid (powdery) component is the crude extract. This will be used for further laboratory analyses.
Antioxidant Assay
2,2-Diphenyl-1-picrylhydrazyl radical-scavenging activity (DPPH)
The DPPH radicals were followed by the protocol of [46]. 4 mL of each sample with various concentrations mixed with 1 mL of a methanolic solution containing DPPH radicals, resulting in the final concentration of DPPH being 0.2 mM. The mixture was shanked and left for 30 min and the absorbance was measured at 517 nm. Ascorbic acid and Troxol were used as a positive control. The amount of sample necessary to decrease the absorbance of DPPH by 50% (IC50) was calculated graphically. The IC50 was calculated.
The percentage inhibition was calculated as follows:
The formula= (A0-A1)/A0] × 100.
Notes = A0 is the absorbance of the control and A1 is the absorbance of the samples (Sudha et al. 2012).
2,2'-azino-bis (3-ethylbenzthiazoline-6-sulphonic acid) radical cation scavenging activity (ABTS)
The ABTS followed the protocol of [47]. The radicals ABTS produced by the reaction between 7 mM, ABTS in water and 2.45 mM potassium persulfate, incubated in the dark at room temperature for 12 h. Before use, the solution was diluted with ethanol to obtain an absorbance of 0.700 ± 0.025 at 734 nm. 10 µL of the sample with 1.0 mL of ABTS working standard in a microcuvette. Ascorbic acid and Troxol were used as a positive control. The IC50 was calculated. The amount of sample necessary to decrease the absorbance of ABTS by 50% (IC50) was calculated graphically. The percentage inhibition was calculated as follows:
The formula= [(A0-A1)/A0] ×100.
Notes = A0 is the absorbance of the control, and A1 is the absorbance of the sample (Sudha et al. 2012).
Antidiabetic Assay
α-glucosidase Assay
The α-glucosidase inhibitory assay procedure followed a previously described method [48] with modifications. The sample solutions at 200 µm/ml were dissolved with 100% dimethyl sulfoxide (DMSO) in phosphate buffer (pH 6.8), and 50 µl of each sample was pipetted and mixed with 100 µl of alpha-glucosidase enzyme (0.35 unit/ml) in vitro. After pre-incubation at 37 \(\:℃\) for 10 min, 100 µl of 1.5 mM p-NPG was added and the sample was further incubated at 37 \(\:℃\) for 20 min, then 1000 µl of Na2CO3 (1M) was added to terminate the reaction. Acarbose was used as a positive control. The absorbance was measured at 405 nm with a microplate reader (PerkinElmer, lnc., USA).
Glucose Consumption Assay
The cell line 3T3-L1 was used for the glucose consumption assay. 3T3-L1 cells were seeded at a density of 4 × 105 cells per well in 96-well plates in 100 µL of culture medium and left to adhere for 24 hours or until cells were growing more than 80% in an incubator (5% CO2, 37°C) before the test. The crude extract of P. djamor var. fuscopruinosus was dissolved in the appropriate solvent (10% DMSO) and 100 µL of extract was added to 96-well plates and left for 24 h. Another 96-well plate was transfed 10 µL of supernatant from each well of the previous prepared plate, and 40 µL of enzymes (GOD (enzyme 25Kv) + POD (enzyme 10kv) + Buffer). The absorbance at 510 nm was measured using a microplate reader (INFINITE M NANO). The difference concentration of glucose (4,2,1,0.5 and 0.25 mg/mL) was prepared for standard. 100 µL of 0.5% MTT was added to 96 well plates incubated for 4 h. Final added sterile DMSO 100 µL. The absorbance at 570 nm was measured. Cytotoxicity was present as the concentration of extracts that inhibit cell growth by 50% (IC50).
Anticancer Assay
Lung cancer cells (A549) and colorectal cancer cells (WS480) were used for the anticancer assay. Cytotoxicity procedures against cancer cells [49] and the resazurin reduction test on 96-well tissue culture plates were followed. Cancer cells were weighed at a density of 4 × 105 cells per well in 96-well plates in 100 µL of culture medium and left to adhere for 24 h or until cell growth increased by more than 80% in the incubator (5% CO2, 37°C) before the test and the crude extract of P. djamor var. fuscopruinosus strain MFLUCC24-0056 was dissolved in the appropriate solvent (10% DMSO) and 100 µL of extract was added to 96-well plates and left to adhere for 24 h. Then 100 µL of 0.5% MTT was added to 96 well plates incubated for 4 h. Final added sterile DMSO 100 µL. The absorbance at 570 nm was measured using a microplate reader (INFINITE M NANO). Cytotoxicity was present as the concentration of extracts that inhibit cell growth by 50% (IC50). IC50 was calculated from a different amount of the trend line of the concentration. In each case, an appropriate number of concentrations was used.
Cytotoxicity Assay
Raw cells (264.7) were used for the cytotoxicity cytotoxicity test of the extract of P. djamor var. fuscopruinosus was done by the reduction of 3-(4,5- dimethylthiazol-2-yl)-2,5- diphenyltetrazolium bromide (MTT) to formazan. 100 µL of raw cells were seeded in a 96-well plate of 4 × 105 cells per well and left for adhering 24 hours or until the cells grow more than 80% in the incubator (5% CO2, 37°C) before being exposed to the mushroom extract, and the mushroom extract was dissolved in the appropriate solvent (10% DMSO) was added 100 µL of extract was added to the 96-well plates and left for 24 hours. 100 µL of 0.5% MTT was added to 96 well plates incubated for 4 h. Final added sterile DMSO 100 µL. The absorbance at 570 nm was measured using a microplate reader (INFINITE M NANO). Cytotoxicity was present as the concentration of extracts that inhibit cell growth by 50% (IC50). The IC50 was calculated from a different amount of trend line of the concentration. In each case, an appropriate number of concentrations were used.