Microorganisms
The strain IG100 was isolated from the marine phanerogam Posidonia oceanica in the Tyrrhenian Sea and cryogenically maintained at −40 °C in the culture collection of microorganisms of the “Laboratorio di Ecologia dei Funghi Marini”, DEB (University of Tuscia, Viterbo, Italy). The test strains (Aspergillus flavus IG133, Trichoderma pleuroticola IG137, Penicillium griseofulvum TSF04, Bacillus pumilus KB66 and Escherichia coli JM109) were from the same culture collection. Strains had been revitalized and sub-cultured on Malt Extract Agar Seawater (MEAs) medium (50 g MEA – Sigma -Aldrich dissolved in 1 L of filtered seawater) and Luria Bertani Seawater (LBs) broth (25 g LB – Sigma -Aldrich dissolved in 1 L of filtered seawater) for the fungal and bacterial strains, respectively.
Phylogenetic analysis
Strain IG100 was previously attributed by ITS and β-tubulin (tub2) gene analyses to the species Mariannaea humicola [30].
The phylogenetic analysis was carried out on β-tubulin (tub2) gene, partial cds utilizing the sequences present in the NCBI (National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information) for the Mariannaea species. A Bayesian Inference was performed [57]. For this analysis, the best fitting evolution model was obtained using the jModeltest software [58] under 88 possible substitution models. The model, obtained using the Akaike Information Criterion (AIC), was TIM1ef, G = 0.430 [59]. The Bayesian Posterior Probability analysis (BPP) was carried out using the Markov Chain Monte Carlo algorithm with generations number = 1,000,000, sub-sampling frequency = 100 and a burn-in fraction = 0.25. BPP values are reported in the resulting tree.
Preliminary screening
The preliminary screening for antifungal and antibacterial activity was carried out with the agar plug diffusion method and agar well diffusion method, this last to evaluate the activity of the compounds in liquid condition [36]. All tests were carried out on saline media and test organisms were selected among marine and/or salt tolerant strains to avoid interferences related to salt presence.
The halotolerant strains of Bacillus pumilus KB66, Escherichia coli JM109 and Penicillium griseofulvum TSF04 were used as test organisms.
To produce standardized inoculum the bacteria were grown in LBs for 24h at 30°C in an orbital shaker at 150 rpm and the fungus in MEAs for 7 days at 25°C. Conidia suspensions were prepared in sterile filtered seawater supplemented with 0.01% of Tween 80 and diluted to obtain a final inoculum ranging from 0.5x105 to 1.0x105. Test plates used in the following tests were inoculated by spreading 100µL of bacteria culture and 300 µL of spore suspension.
Plug diffusion method - M. humicola IG100 was cultured for 7 days on MEAs medium supplemented with 0.2 gL-1 streptomycin sulfate at 25°C; agar plots were aseptically cut near the front of the colony and deposited on the agar surface of plates previously inoculated by test organisms. After incubation (24h, 30°C for bacteria and 48-72h, 25°C for fungus) the antimicrobial activity was estimated measuring the inhibitions area (halos).
Well diffusion method - Strain IG100 was cultured in Malt Extract Seawater (MEs) [30]. Five Erlenmeyer flask (1000 mL), containing 250 mL of medium, were inoculated with 1 mg/mL dry weight of mycelium grown for 5 days on MEAs and incubated for 12 days at 25°C on a rotary shaker (150 rpm). Subsequently, one Erlenmeyer flask culture was aseptically filtered to separate the broth from the biomass; the others cultures were directly extracted with EtOAc (1 L x 3 times). The EtOAc extract solution was concentrated to dryness by a rotary evaporator and utilized as crude extract. In each inoculated test plate, four holes (6-8 mm) were punched aseptically with a sterile cork borer. 100 µL of broth or EtOAc extract at 0.6 mg/mL, 2% DMSO, were added in two of the holes. While the remaining two holes were used for a positive (Streptomycin 0.2 mg/mL for bacteria and Myconazole 0.05 mg/mL for fungal strain) and negative control (culture media). Plates were incubated as reported above, the inhibition zone around the wells were measured and the antimicrobial activity was estimated as:
Antimicrobial activity (%) = (IC-IS)/IC x 100
Where, IC is the inhibition area in positive well and IS the inhibition area in well containing potential antimicrobial agent. Each analysis was carried out in triplicate.
Antifungal activity assay
The biological activities of EtOAc extract and its principal compounds were tested in a liquid growth medium (MBs) against P. griseofulvum utilizing the broth dilution methods. Compounds were first dissolved in DMSO, which was then diluted to a 2% aqueous solution to obtain each compound concentration of 5x10-3 M. The compounds were added, in a 24-well microplate, to the suspension of the P. griseofulvum spore (1x105 mL-1) to obtain final concentrations of 1, 10, 100, 1000 µg/mL. The conidial suspension was prepared in MEBs as reported above. DMSO at appropriate concentrations was used as control treatments.
MIC values were determined for the crude EtOAc extract and active fractions against the following fungal strains: A. flavus IG133, P. griseofulvum TSF04 and T. pleuroticola IG137. The broth micro-dilution methods in a 96-well microplate was utilized; twofold dilutions of the antifungal agents, Myconazole as positive control and a negative control with DMSO (concentrations < 2%) were made. The test was carried out in duplicate utilizing two initial concentrations and the relative twofold dilutions: S1, 1000-1 µg/mL and S2, 100-0.1 µg/mL. Spore suspensions of the test organisms were standardized to the final concentrations of 0.5x105 conidia mL-1. The 96-well microplates were incubated for 48h at 25°C.
For the determination of MIC endpoint, a viewing device (Canon visualizer RE450) was utilized.
Fungistatic or fungicidal activities were determined by subcultures in MEAs 20 µL of the spore suspensions taken from the MIC wells.
Isolation and characterization of bioactive secondary metabolites - Chemistry General
Reagents and solvents were obtained from commercial suppliers (Sigma-Aldrich Srl, Milan, Italy) and used without further purification. TLC chromatography was performed on precoated aluminium silica gel SIL G/UV254 plates (Macherey-Nagel & Co.). The detection occurred by UV lamp (254 nm). Merck silica gel 60 was used for flash chromatography (23-400 mesh). All products were dried in high-vacuum (10-3 mbar). 1H NMR and 13C NMR spectra were measured on a Bruker Avance DRX400 (400 MHz/100 MHz) spectrometer using TMS as internal standard. Chemical shifts in 1H NMR spectra are reported in parts per million (ppm) on the δ scale from an internal standard of residual CDCl3 (7.28 ppm). Data are reported as follows: chemical shift, multiplicity (s = singlet, d = doublet, t = triplet, q = quartet, m = multiplet, br = broad), coupling constant in hertz (Hz), and integration. Chemical shifts of 13C NMR spectra are reported in ppm from the central peak of CDCl3 (77.23 ppm). HRESIMS spectra were recorded with a Thermo Scientific Q Exactive hybrid quadrupole-Orbitrap mass spectrometer. Infrared (IR) spectra were recorded on a Perkin-Elmer 2000 FT-IR. A semipreparative UHPLC Thermo Scientific Dionex Ultimate 3000 equipped with multi-wave length detector was used for purification. The column used was a Thermo Scientific Hypersil GOLD (15.0 cm length, 4.6 mm I.D., 3 µm particle size) eluted with mixtures of water containing 0.05% formic acid (HCOOH; solvent A) and acetonitrile (solvent B) at a flow rate of 0.5 mL/min. Detection was at 254 nm and runtime was set at 60 min.
The ethyl acetate extract was concentrated in vacuo. The dry residue (55 mg) was purified by repeated cycles of silica gel chromatography using dichloromethane/methanol (98:2) as eluent. Five major fractions (PO1-PO5) were isolated from the overall EtOAc extract (5.9, 10.5, 9.5, 14.6, and 9.5 mg, respectively). Semipreparative UHPLC was performed to further purify the fractions endowed with the higher biological activity (PO3 and PO5) obtaining 9.1 mg of compound 1 and 8.9 mg of compound 2.
Terpestacin 1: pale-yellow oil; [α]D = -21 (c 0.1, MeOH); IR (neat) 3365, 2932, 1699, 1653 cm–1; 1H NMR (400 MHz, CDCl3) d 5.79 (s, 1H), 5.41 (m, 1H), 5.25 (dd, J = 10.1, 5.2 Hz, 1H), 5.14 (m, 1H), 4.07 (dd, J = 10.1, 4.0 Hz, 1H), 3.90 (dd, J = 10.4, 7.0 Hz, 1H), 3.83 (dd, J = 10.4, 5.5 Hz, 1H), 2.72 (dd, J = 11.3, 2.1 Hz, 1H), 2.68 (m, 1H), 2.45 (d, J = 17.4 Hz, 1H), 2.40 (dd, J = 13.7, 10.4 Hz, 1H), 2.22-2.22 (m, 2H), 2.12-2.12 (m, 2H), 2.04-1.90 (m, 2H), 1.80-1.68 (m, 3H), 1.65 (s, 3H), 1.64 (s, 3H), 1.58 (s, 3H), 1.30 (d, J = 7.3 Hz, 3H), 1.01 (s, 3H); 13C NMR (100 MHz, CDCl3) δ 208.0, 149.0, 146.8, 138.3, 136.7, 133.1, 129.1, 124.5, 121.7, 76.7, 66.3, 49.8, 49.1, 40.5, 39.5, 37.3, 35.1, 30.0, 29.0, 24.0, 16.4, 15.8, 15.5, 14.6, 10.7. ppm; HRESIMS m/z [M+Na]+ calcd. for C25H38O4Na 425.2662, found 425.2682.
19-acetyl-4-hydroxydictyodiol 2: colorless oil; [α]D = -43 (c 0.02, CHCl3); IR (neat) 3439, 2921, 1737, 1638, 1455, 1381 cm-1; NMR 1H (CDCl3, 400 MHz) d 5.82 (dd, J = 8.4, 3.0 Hz, 1H), 5.30 (d, J = 11.4 Hz, 1H), 5.07 (t, J = 6.6 Hz, 1H), 4.47 (d, J = 12.6 Hz, 1H), 4.39 (d, J = 12.6, Hz, 1H), 4.28 (br, 1H), 3.81 (t, J = 10.2 Hz, 1H), 3.55 (dd, J = 10.2, 4.2 Hz, 1H), 3.14 (dd, J = 9.6, 4.2 Hz, 1H), 3.11 (m, 1H), 2.63 (dd, J = 14.4, 9.0 Hz, 1H), 2.37 (d, J = 12.6, 1H), 2.14 (dd, J = 12.6, 3.0 Hz, 1H), 2.09 (br, 1H), 2.06 (s, 3H), 2.00 (m, 1H), 1.97 (s, 3H), 1.94 (m, 1H), 1.83 (m, 1H), 1.68 (s, 3H), 1.60 (s, 3H), 1.30 (m, 1H), 1.21 (m, 1H), 1.02 (d, J = 6.6, 3H) ppm; 13C (CDCl3, 100 MHz) d 170.7, 142.4, 135.2, 131.9, 130.0, 128.5, 124.5, 74.6, 67.0, 60.8, 51.4, 49.5, 41.5, 38.7, 33.3, 28.2, 26.2, 25.8, 21.2, 20.4, 17.9, 16.4 ppm; HRESIMS m/z [M+Na]+ calcd. for C22H36O4Na, 387.2511, found 387.2508.