Collection of T. officinale
The vegetal material was collected in Córdoba city, Argentina (between 31º22'47.75 "S, 64º8'46.34" W and 31º22'43.84 "S, 64º 8'24.49" W), in accordance with the national guidelines of Argentina. The species was identified by PhD Gloria Barboza, in the Museum of Botany of Facultad de Ciencias Exactas Físicas y Naturales-Universidad Nacional de Córdoba, where a sample of herbarium was deposited (CORD00027086).
Obtaining root extract of T. officinale (R-EtOH)
Individuals of dandelion were transported to the laboratory, washed with water in order to remove all traces of dust, and then dried in an oven stove at 28ºC, limiting its exposure to the light. Once the material was dried, roots were separated from aerial parts and subsequently ground. An extraction with ethanol was carried out by means of a Soxhlet apparatus. Extractive liquids were separated from the plant material which was concentrated to dryness by using a rotary evaporator under reduced pressure and at moderate temperatures. A stock solution in dimethylsulfoxide [100 mg/mL] was prepared from which subsequent tests were performed.
Cell lines
The following cell types were used: CaSki (HPV16+), HeLa (HPV18+), C33A (HPV-) cervical cancer cell lines and human immortalized keratinocytes HaCaT (HPV-). This last cell line was used as a control. CaSki and HaCaT cells were maintained in RPMI 1640 medium (Gibco™, Thermo Fisher Scientific), while HeLa and C33A were kept in Dulbecco’s modified Eagle’s medium (DMEM Gibco™, Thermo Fisher Scientific), supplemented with 10% fetal bovine serum (FBS, NATOCOR®, Argentina) and 40 µg/mL gentamicin. All cell lines were provided by the Cell Culture Laboratory of Instituto de Virologia Dr. Jose Maria Vanella, Argentina and were preserved in culture flasks at 37°C with 5% CO2 in a humidified incubator.
Cell viability assay
Cell viability and inhibitory concentration values [IC20] and [IC50] were determined by the MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] reduction assay. This assay allows to assess the cytotoxic potential of R-EtOH extract, since only mitochondrial dehydrogenases formed in viable cells are able to reduce tetrazolium salt into an insoluble formazan product [23]. Briefly, 1x105 cells/mL were seeded in 96-well plates at 37˚C with 5% CO2 for overnight incubation and treated with different concentrations of R-EtOH (10-1000 µg/mL) for 48 hours in their respective media, supplemented with 2% FBS. The cells were then incubated in a serum-free medium that contained MTT at a final concentration of 0.5 mg/mL for 1 hour [24]. The crystals formed in intact cells were solubilized in 100 µL of MTT solution (10% of triton X-100, 10% of 0.1N HCl, 80% isopropanol), and the absorbance was measured at 570 nm by using a microplate reader (BioTek ELx800, USA). All samples were assayed in triplicate, and values were normalized to untreated controls. Analysis of results was done with software Origin Pro 8.6.
Clonogenic Survival Assay
Clonogenic assay allows us to estimate cell survival, based on the cell’s regenerative capacity after having been exposed to an extract. Cells (200 cells/well) were placed in 12-well plates and incubated for 48 hours in RPMI 1640 or DMEM with 10% FBS at 37°C and 5% CO2 in a humidified incubator. Then, the aforementioned medium was discarded and the cells were treated with [IC20] and [IC50] R-EtOH in culture medium with 2% FBS for 2 hours. Culture medium with 2% FBS was used for the untreated control. Subsequently, the medium with R-EtOH was also discarded, washed with phosphate buffered saline (PBS), and then medium supplemented with 10% FBS in 3% methylcellulose was added. After 7 days, it was fixed with methanol and stained with 0.1% violet crystal. The number of visible colonies was counted using an optical microscope with a 40x magnification. It was interpreted as a colony whose clone comprises 50 cells or more. The results were expressed as surviving fraction (SF) [25].
Migration assay
Cell migration capacity was calculated by wound healing assay. Cells were seeded at a density of 2 x105 cells/mL, placed into 12-well plates and incubated for 48 hours reaching 100% confluence, then they were treated with [IC20] R-EtOH in culture medium with 2% FBS for 48 hours. Culture medium with 2% FBS was used for the untreated control. The next day, artificial wounds in each one of the cell lines were made with 10µL tips, they were washed three times with PBS and incubated in a serum-free medium. Wounds were observed at 0, 6, 12, 18 and 24 hrs, with the OLYMPUS IX81 microscope to 20X. Average extension of the wound closure was evaluated by measuring the area of the wound by the ImageJ/Fiji software, version 1.46 (http://imagej.nih.gov/ij/) [26].
2.7 Identification of cell apoptosis by means of Hoechst staining and TUNEL assay
Cells were seeded at a density of approximate 1 x105 cells/mL, in 96 well plates. The next day, they were treated with [IC20] and [IC50] R-EtOH in culture medium with 2% FBS, in triplicate and for 48 hours. Culture medium with 2% FBS was used for the untreated control. For terminal deoxynucleotidyl transferase dUTP nick-end labeling, TUNEL assay was performed using the In Situ Cell Death Detection Kit, TMR red TUNEL (Roche Diagnostics, Sigma-Aldrich). Cells were fixed in 4% paraformaldehyde and then they were washed with PBS. Subsequently, cells were permeabilized with 0.1% Triton X-100, in 0.1% sodium citrate for 2 min on ice and then they were washed with PBS. The cells were incubated with 50 µL TUNEL reaction mixture at 37°C for 60 min in a dark humidified atmosphere. Images were captured with an OLYMPUS IX81 fluorescence microscope, and subsequently they were evaluated with ImageJ/Fiji software, version 1.46 (http://imagej.nih.gov/ij/). Hoechst 33258 staining (Sigma-Aldrich) was used to visualize the nucleus.
Kinetic of apoptotic cell death via Annexin VFITC/7AAD assay.
Cells were seeded at a density of 2 x105 cells/mL placed into 12-well plates and incubated reaching 100% confluence. Then they were treated with [IC20] R-EtOH in culture medium with 2% FBS for 24 and 48 hours. Culture medium with 2% FBS was used for the untreated control. As a following step, cells were trypsinized (0.15% trypsin) to lift adherent cells from the plates; they were washed twice with FBS and once with PBS and finally suspended in culture medium. Staining was carried out with Kit I for detection of apoptosis FITC annexin V, according to the manufacturer's instructions (BD Pharmingen ™). Subsequent to the staining stage, the percentages of viable, apoptotic and necrotic cells were analyzed using the FACSCanto™ II (BD Biosciences) flow cytometer, and data were interpreted with the FlowJo X software, version 10.0.7r2.
Statistical analysis
All experiments were repeated at least three independent times. Statistical analyses were performed using GraphPad Prism 6.1 and Origin Pro 8.6 software. Statistical tests included the Students T-test and Fisher-Test in which p < 0.05 or less was considered significant.