1. Lugtenberg B, Kamilova F: Plant-growth-promoting rhizobacteria. In: Annual Review of Microbiology. vol. 63; 2009: 541-556.
2. Berendsen RL, Pieterse CMJ, Bakker PAHM: The rhizosphere microbiome and plant health. TRENDS PLANT SCI 2012, 17(8):478-486.
3. Turner TR, James EK, Poole PS: The plant microbiome. Genome Biology 2013, 14(6).
4. Vacheron J, Desbrosses G, Bouffaud ML, Touraine B, Moënne-Loccoz Y, Muller D, Legendre L, Wisniewski-Dyé F, Prigent-Combaret C: Plant growth-promoting rhizobacteria and root system functioning. Frontiers in Plant Science 2013, 4(SEP).
5. Philippot L, Raaijmakers JM, Lemanceau P, Van Der Putten WH: Going back to the roots: The microbial ecology of the rhizosphere. Nature Reviews Microbiology 2013, 11(11):789-799.
6. Badri DV, Vivanco JM: Regulation and function of root exudates. Plant, Cell and Environment 2009, 32(6):666-681.
7. Rengel Z, Marschner P: Nutrient availability and management in the rhizosphere: Exploiting genotypic differences. New Phytol 2005, 168(2):305-312.
8. Somers E, Vanderleyden J, Srinivasan M: Rhizosphere bacterial signalling: A love parade beneath our feet. Crit Rev Microbiol 2004, 30(4):205-240.
9. Emmert EAB, Geleta SB, Rose CM, Seho-Ahiable GE, Hawkins AE, Baker KT, Evans AS, Harris ME, Mrozinski AC, Folkoff ME et al: Effect of land use changes on soil microbial enzymatic activity and soil microbial community composition on Maryland's Eastern Shore. Applied Soil Ecology 2021, 161.
10. Yesilonis I, Szlavecz K, Pouyat R, Whigham D, Xia L: Historical land use and stand age effects on forest soil properties in the Mid-Atlantic US. Forest Ecology and Management 2016, 370:83-92.
11. Ernst E: Panax ginseng: An overview of the clinical evidence. Journal of Ginseng Research 2010, 34(4):259-263.
12. Baeg IH, So SH: The world ginseng market and the ginseng (Korea). Journal of Ginseng Research 2013, 37(1):1-7.
13. Wu H, Yang HY, You XL, Li YH: Diversity of endophytic fungi from roots of Panax ginseng and their saponin yield capacities. SpringerPlus 2013, 2(1):1-9.
14. Zhao J, Q.: Analysis of amino acid composition and total content of the ginsenoside in wild and cultivated ginseng. ACTA SCIENTIARUM NATURALIUM UNIV ERSI TATIS JILINENSIS 1989(03):99-101.
15. Li MR, Shi FX, Zhou YX, Li YL, Wang XF, Zhang C, Wang XT, Liu B, Xiao HX, Li LF: Genetic and Epigenetic Diversities Shed Light on Domestication of Cultivated Ginseng (Panax ginseng). Molecular Plant 2015, 8(11):1612-1622.
16. Sun H, Wang Q, Zhang Y, Yang Z, Xu C: Integrated Evaluation of Soil Fertility of Panax ginseng under Different Cultivation Modes. Journal of Jilin Agricultural University 2015, 37(03):323-331.
17. Ying YX, Ding WL, Li Y: Characterization of soil bacterial communities in rhizospheric and nonrhizospheric soil of panax ginseng. Biochemical Genetics 2012, 50(11-12):848-859.
18. Chanyong L, Kim KY, Lee JE, Kim S, Ryu D, Choi JE, An G: Enzymes hydrolyzing structural components and ferrous ion cause rusty-root symptom on ginseng (Panax ginseng). Journal of Microbiology and Biotechnology 2011, 21(2):192-196.
19. Wang Q, Sun H, Xu C, Ma L, Li M, Shao C, Guan Y, Liu N, Liu Z, Zhang S et al: Analysis of rhizosphere bacterial and fungal communities associated with rusty root disease of Panax ginseng. Applied Soil Ecology 2019, 138:245-252.
20. Miao ZQ, Li SD, Liu X, Chen YJ, Li YH, Wang Y, Guo RJ, Xia ZY, Zhang KQ: The causal microorganisms of Panax notoginseng root rot disease. Scientia Agricultura Sinica 2006, 39:1371-1378.
21. Rahman M, Punja ZK: Biochemistry of ginseng root tissues affected by rusty root symptoms. Plant Physiology and Biochemistry 2005, 43(12):1103-1114.
22. Xiao C, Yang L, Zhang L, Liu C, Han M: Effects of cultivation ages and modes on microbial diversity in the rhizosphere soil of panax ginseng. Journal of Ginseng Research 2016, 40(1):28-37.
23. Dong L, Xu J, Li Y, Fang H, Niu W, Li X, Zhang Y, Ding W, Chen S: Manipulation of microbial community in the rhizosphere alleviates the replanting issues in Panax ginseng. Soil Biol Biochem 2018, 125:64-74.
24. Dong L, Xu J, Zhang L, Cheng R, Wei G, Su H, Yang J, Qian J, Xu R, Chen S: Rhizospheric microbial communities are driven by Panax ginseng at different growth stages and biocontrol bacteria alleviates replanting mortality. Acta Pharmaceutica Sinica B 2018, 8(2):272-282.
25. Wei X, Wang X, Cao P, Gao Z, Chen AJ, Han J: Microbial Community Changes in the Rhizosphere Soil of Healthy and Rusty <i>Panax ginseng</i> and Discovery of Pivotal Fungal Genera Associated with Rusty Roots. BioMed Research International 2020, 2020:8018525.
26. Hernandez-Teran A, Navarro-Diaz M, Benitez M, Lira R, Wegier A, Escalante AE: Host genotype explains rhizospheric microbial community composition: The case of wild cotton metapopulations (Gossypium hirsutum L.) in Mexico. FEMS Microbiology Ecology 2020, 96(8).
27. Berg G, Smalla K: Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiology Ecology 2009, 68(1):1-13.
28. Wang XB, Hsu CM, Dubeux JCB, Mackowiak C, Blount A, Han XG, Liao HL: Effects of rhizoma peanut cultivars (Arachis glabrata Benth.) on the soil bacterial diversity and predicted function in nitrogen fixation. ECOL EVOL 2019, 9(22):12676-12687.
29. Coleman-Derr D, Desgarennes D, Fonseca-Garcia C, Gross S, Clingenpeel S, Woyke T, North G, Visel A, Partida-Martinez LP, Tringe SG: Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species. New Phytologist 2016, 209(2):798-811.
30. Qaderi MM, Reid DM, Yeung EC: Morphological and physiological responses of canola (Brassica napus) siliquas and seeds to UVB and CO<inf>2</inf> under controlled environment conditions. Environmental and Experimental Botany 2007, 60(3):428-437.
31. Smith CR, Blair PL, Boyd C, Cody B, Hazel A, Hedrick A, Kathuria H, Khurana P, Kramer B, Muterspaw K et al: Microbial community responses to soil tillage and crop rotation in a corn/soybean agroecosystem. Ecology and Evolution 2016, 6(22):8075-8084.
32. Soman C, Li D, Wander MM, Kent AD: Long-term fertilizer and crop-rotation treatments differentially affect soil bacterial community structure. Plant and Soil 2017, 413(1-2):145-159.
33. Zhang B, Liang C, He H, Zhang X: Variations in Soil Microbial Communities and Residues Along an Altitude Gradient on the Northern Slope of Changbai Mountain, China. PLoS ONE 2013, 8(6).
34. Meiser A, Bálint M, Schmitt I: Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns. New Phytologist 2014, 201(2):623-635.
35. Shakya M, Gottel N, Castro H, Yang ZK, Gunter L, Labbé J, Muchero W, Bonito G, Vilgalys R, Tuskan G et al: A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees. PLoS ONE 2013, 8(10).
36. Taylor JW, Turner E, Townsend JP, Dettman JR, Jacobson D: Eukaryotic microbes, species recognition and the geographic limits of species: Examples from the kingdom Fungi. Philosophical Transactions of the Royal Society B: Biological Sciences 2006, 361(1475):1947-1963.
37. Szoboszlay M, Lambers J, Chappell J, Kupper JV, Moe LA, McNear DH: Comparison of root system architecture and rhizosphere microbial communities of Balsas teosinte and domesticated corn cultivars. Soil Biology and Biochemistry 2015, 80:34-44.
38. Li Y, Ying YX, Zhao DY, Ding WLJOJoG: Microbial community diversity analysis of Panax ginseng rhizosphere and non-rhizosphere soil using randomly amplified polymorphic DNA method. 2012, 2(2):95-102.
39. Ying, Yi-Xin, Li, Yong, Ding, Wan-Long, Hu, Chen-Yun: Dynamics of Panax ginseng Rhizospheric Soil Microbial Community and Their Metabolic Function zicrobial Community and Their Metabolic Function. In: Cross-Strait and csnr National Chinese Medicine and Natural Medicine Resources Academic Seminar 2012.
40. Wang X, Yu S, Zhou L, Fu S: Soil microbial characteristics and the influencing factors in subtropical forests. Shengtai Xuebao/ Acta Ecologica Sinica 2016, 36(1):8-15.
41. Chen S, Li X, Lavoie M, Jin Y, Xu J, Fu Z, Qian H: Diclofop-methyl affects microbial rhizosphere community and induces systemic acquired resistance in rice. Journal of Environmental Sciences (China) 2017, 51:352-360.
42. Arango L, Buddrus-Schiemann K, Opelt K, Lueders T, Haesler F, Schmid M, Ernst D, Hartmann A: Effects of glyphosate on the bacterial community associated with roots of transgenic Roundup Ready® soybean. European Journal of Soil Biology 2014, 63:41-48.
43. Pérez-Jaramillo JE, Mendes R, Raaijmakers JM: Impact of plant domestication on rhizosphere microbiome assembly and functions. Plant Molecular Biology 2016, 90(6):635-644.
44. Haichar FEZ, Marol C, Berge O, Rangel-Castro JI, Prosser JI, Balesdent J, Heulin T, Achouak W: Plant host habitat and root exudates shape soil bacterial community structure. ISME J 2008, 2(12):1221-1230.
45. Oger PM, Mansouri H, Nesme X, Dessaux YJ: Engineering root exudation of Lotus towards the production of two novel carbon compounds leads to the selection of distinct microbial populations in the rhizosphere. Microbial Ecology 2004, 47(1):96-103.
46. Grayston SJ, Wang S, Campbell CD, Edwards AC: Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biology and Biochemistry 1998, 30(3):369-378.
47. Shi S, Chang J, Tian L, Nasir F, Ji L, Li X, Tian C: Comparative analysis of the rhizomicrobiome of the wild versus cultivated crop: insights from rice and soybean. Archives of Microbiology 2019, 201(7):879-888.
48. Dong L, Xu J, Feng G, Li X, Chen S: Soil bacterial and fungal community dynamics in relation to Panax notoginseng death rate in a continuous cropping system. Scientific Reports 2016, 6.
49. Keesing F, Belden RK, Daszak R, Dobson R, Harvell RD, Holt RD, Hudson R, Jolles R, Jones RE, Mitchell REJN: Impacts of biodiversity on the emergence and transmission of infectious diseases. 2010, 468(7324):647-652.
50. Ying YX, Ding WL, Li Y: Characterization of soil bacterial communities in rhizospheric and nonrhizospheric soil of panax ginseng. Biochem Genet 2012, 50(11-12):848-859.
51. Voriskova J, Baldrian P: Fungal community on decomposing leaf litter undergoes rapid successional changes. ISME Journal 2013, 7(3):477-486.
52. Wei X, Wang X, Cao P, Gao Z, Chen AJ, Han J: Microbial Community Changes in the Rhizosphere Soil of Healthy and Rusty Panax ginseng and Discovery of Pivotal Fungal Genera Associated with Rusty Roots. BioMed Research International 2020, 2020.
53. Glinushkin AP, Ovsyankina AV, Kornyukov DA: Diagnosis of fungi of the genus Fusarium and Alternaria, Bipolaris, causing diseases of sunflower, and immunological methods for the evaluation and selection of genotypes to the pathogens. IOP Conference Series: Earth and Environmental Science 2021, 663(1):012049.
54. Okello PN, Petrovic K, Singh AK, Kontz B, Mathew FM: Characterization of species of Fusarium causing root rot of Soybean (Glycine max L.) in South Dakota, USA. Canadian Journal of Plant Pathology 2020, 42(4):560-571.
55. Punja ZK, Wan A, Goswami RS, Verma N, Rahman M, Barasubiye T, Seifert KA, Lévesque CA: Diversity of Fusarium species associated with discolored ginseng roots in British Columbia. Canadian Journal of Plant Pathology 2007, 29(4):340-353.
56. Huang W, Sun D, Fu J, Zhao H, Wang R, An Y: Effects of continuous sugar beet cropping on rhizospheric microbial communities. Genes 2020, 11(1).
57. National Earth System Science Data Center, . Soil SubCenter, National Science & Technology Infrastructure of China. (http://soilgeodatacn) 2020.
58. Ullah A, Akbar A, Luo Q, Khan AH, Manghwar H, Shaban M, Yang X: Microbiome Diversity in Cotton Rhizosphere Under Normal and Drought Conditions. Microbial Ecology 2019, 77(2):429-439.
59. Magoč T, Salzberg SL: FLASH: Fast length adjustment of short reads to improve genome assemblies. Bioinformatics 2011, 27(21):2957-2963.
60. Edgar RC: UPARSE: Highly accurate OTU sequences from microbial amplicon reads. NAT METHODS 2013, 10(10):996-998.
61. Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R: UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 2011, 27(16):2194-2200.
62. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ et al: Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 2009, 75(23):7537-7541.
63. Dixon P: VEGAN, a package of R functions for community ecology. Journal of Vegetation Science 2003, 14(6):927-930.
64. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pẽa AG, Goodrich JK, Gordon JI et al: QIIME allows analysis of high-throughput community sequencing data. NAT METHODS 2010, 7(5):335-336.