Primer ID
|
Primer sequence (5′–3′)
|
Size
(bp)
|
Tm
(°C)
|
SNP type
|
SNP position
|
|
|
|
HWEP
|
PIC
|
MAF
|
110
|
F: TCTGAGACACTGTGTGATTAAGAGA
R: TGATCATACGAGGAGGAAACGT
|
313
|
59
|
A/G
|
67
|
0.9000
|
0.5013
|
-0.2902
|
***
|
0.3725
|
0.4500
|
115
|
F: GAGAGAATGGGGGCGTCTTC
R: CCTGTTACTGCAGTGCGTTG
|
317
|
60
|
G/A
|
54
|
0.1750
|
0.2066
|
0.0680
|
NS
|
0.1910
|
0.0875
|
152
|
F: GCAATGCCTGACTGTTGCTC
R: CGGGGAGAGGACGAAATCAG
|
338
|
60
|
T/A
|
52
|
0.3000
|
0.4418
|
0.1641
|
NS
|
0.3955
|
0.1500
|
153
|
F: ATGCCTGACTGTTGCTCACA
R: TGTGGAGTATGTGTCTGGGC
|
262
|
60
|
T/G
|
87
|
0.3000
|
0.4418
|
0.1641
|
NS
|
0.3955
|
0.1500
|
255
|
F: TGCGCACTTAAATGACGAGC
R: ACGGGCCGTTAAATGCTAAC
|
338
|
60
|
T/A
|
75
|
0.9000
|
0.5051
|
-0.2868
|
***
|
0.3744
|
0.4750
|
843
|
F: CGACCGCCATTTCAGCTGTA
R: AAGTCAAAATTTCGCCCGGC
|
296
|
61
|
A/C
|
85
|
0.8750
|
0.4984
|
-0.2799
|
***
|
0.3711
|
0.4375
|
1091
|
F: AAGATGGCTGTAATTAACAAAAGA
R: ACTCCAAAAGTACTGGGCCG
|
269
|
60
|
A/G
|
108
|
0.7000
|
0.4608
|
-0.2120
|
NS
|
0.3515
|
0.3500
|
1092
|
F: AAGATGGCTGTAATTAACAAAAGA
R: ACTCCAAAAGTACTGGGCCG
|
293
|
60
|
A/T
|
109
|
0.7000
|
0.4608
|
-0.2120
|
NS
|
0.3515
|
0.3500
|
1145
|
F: CAAGACGTGGCCTGAATCCT
R: GCTGCCGAATATACAACCGC
|
273
|
60
|
A/G
|
95
|
0.5750
|
0.4149
|
-0.1676
|
NS
|
0.3258
|
0.2875
|
14760
|
F: TCGCCAGTTGAGTATGACCC
R: ATGGCTGCCGTACTCAAGAG
|
311
|
60
|
C/T
|
53
|
0.9500
|
0.5051
|
-0.3144
|
***
|
0.3744
|
0.4750
|
14955
|
F: TGACTGGTCATTGTCCAAGGA
R: ATTGTTGTGGAGGCGTTTGC
|
319
|
60
|
C/A
|
93
|
0.7250
|
0.4680
|
-0.2213
|
NS
|
0.3554
|
0.3625
|
15195
|
F: TTCTACCCCTACGTGGACCA
R: ACCTCCGTATACGAGTCCTGA
|
311
|
60
|
G/C
|
68
|
0.9500
|
0.5051
|
-0.3144
|
***
|
0.3744
|
0.4750
|
15433
|
F: ATCTTACACTATTTATACACTGGGA
R: AGAAGACAGATTCTGGAGCTGT
|
337
|
59
|
C/G
|
95
|
0.2750
|
0.2826
|
-0.0030
|
NS
|
0.2516
|
0.1375
|
15481
|
F: TCATTGGTTAGCTGCTCTGGT
R: TCATCGGTTTGCGTCAGTCA
|
336
|
60
|
T/C
|
66
|
0.8750
|
0.4984
|
-0.2799
|
***
|
0.3711
|
0.4375
|
16111
|
F: TGTCACTCAATCACACATTGTCT
R: TGGGGACAGAATAGTCTAGCCA
|
310
|
60
|
T/G
|
96
|
0.9750
|
0.5060
|
-0.3221
|
***
|
0.3748
|
0.4875
|
16287
|
F: CTACTGAGCTTCGGCCACAA
R: GCGGCATTGTCAGAATAGGC
|
334
|
60
|
A/G
|
41
|
0.2000
|
0.1823
|
-0.0462
|
NS
|
0.1638
|
0.1000
|
16582
|
F: TCAGAACTGCTTGACCCTGG
R: TAATGAAACGTGTGTCGCGC
|
273
|
60
|
A/G
|
97
|
0.8000
|
0.4861
|
-0.2499
|
*
|
0.3648
|
0.4000
|
16714
|
F: TGCTTGCGTTTAAACCACCG
R: TGCTTGCGTTTAAACCACCG
|
335
|
60
|
C/T
|
73
|
0.9750
|
0.5060
|
-0.3221
|
***
|
0.3748
|
0.4875
|
47003
|
F: ACAAGAGGCTCCAAATTATCCTT
R: CCGTGGTTTGGCGGTAATTC
|
278
|
60
|
T/C
|
77
|
0.8500
|
0.4949
|
-0.2698
|
**
|
0.3693
|
0.4250
|
63291
|
F: GGGGCCCATAGCGTGAATT
R: TTCGACTGCTACACGGATCC
|
326
|
60
|
T/C
|
40
|
0.0750
|
0.3522
|
0.6463
|
NS
|
0.3080
|
0.0375
|
63292
|
F: GGGGCCCATAGCGTGAATT
R: GCCAGTCCGCCAGTTTAAGA
|
315
|
60
|
T/C
|
83
|
0.0750
|
0.3522
|
0.6463
|
NS
|
0.3080
|
0.0375
|
64525
|
F: GCTCCTGCTGGTTTTCGAAC
R: TTCTGGTTCCCCTGCGTTTT
|
318
|
60
|
G/C
|
50
|
0.4750
|
0.4497
|
-0.0453
|
NS
|
0.3652
|
0.2875
|
65017
|
F: GTAGGTTGCCAGCTCACTGT
R: GGAGCTAAGCACGCGTAGTA
|
272
|
60
|
A/G
|
84
|
0.1250
|
0.3946
|
0.5068
|
NS
|
0.3557
|
0.1375
|
67289
|
F: CGAACGATTAGAGCGGGACA
R: GTAGGACCTAAACTGCCCGG
|
260
|
60
|
C/T
|
103
|
0.8500
|
0.4949
|
-0.2698
|
**
|
0.3693
|
0.4250
|
67481
|
F: TGTGTTTCCGTTGTTGTGGT
R: CTGGTGTGTGTATCTGCCCA
|
325
|
60
|
T/C
|
88
|
0.8500
|
0.4949
|
-0.2698
|
**
|
0.3693
|
0.4250
|
67913
|
F: GGGCAGGGGTGCAAAGTATA
R: TCGCATCAACAACGTACACG
|
292
|
60
|
A/T
|
75
|
0.1750
|
0.5934
|
0.5352
|
*
|
0.5197
|
0.1875
|
68037
|
F: TCCAGTTCTGCATGAAATTATCCA
R: CGGGAACTCGGAAGAACCAA
|
310
|
60
|
G/A
|
97
|
0.2750
|
0.2402
|
-0.0699
|
NS
|
0.2091
|
0.1375
|
68108
|
F: AGTTTGCAAGCAATTTCAAGA
R: ACGGAGGATTCGTTGCCATT
|
341
|
60
|
G/A
|
41
|
0.9500
|
0.5051
|
-0.3114
|
***
|
0.3744
|
0.4750
|
97286
|
F: GAATACCCTTCCCGTGCAGT
R: GACTTTGCCGCCAAGCATAC
|
324
|
60
|
G/A
|
69
|
0.3250
|
0.3168
|
-0.0300
|
NS
|
0.2771
|
0.1625
|
97287
|
F: GGAATACCCTTCCCGTGCAG
R: CCAGGGGCTTGATATTGGCA
|
281
|
60
|
G/A
|
77
|
0.3250
|
0.3168
|
-0.0300
|
NS
|
0.2771
|
0.1625
|
97451
|
F: TCCTCGGAACAACTAATCCT
R: GTCACCGCTGACTATCGACC
|
291
|
60
|
C/T
|
35
|
0.9000
|
0.5013
|
-0.2902
|
***
|
0.3725
|
0.4500
|
97605
|
F: CGAACGATTAGAGCGGGACA
R: ATTTGACGGGACTCTGGTCG
|
324
|
60
|
G/A
|
95
|
0.3500
|
0.4722
|
0.1258
|
NS
|
0.3947
|
0.2750
|
98716
|
F: AGCGGTGAAACAGGTAAGGA
R: CTCCCTCTGACTGGCTCCAT
|
338
|
61
|
T/C
|
43
|
0.9750
|
0.5060
|
-0.3221
|
***
|
0.3748
|
0.4875
|
101130
|
F: TCATGCCGAGTAGATATTTCCA
R: AGAATCTGTACCGTTGCCTCT
|
306
|
59
|
G/A
|
61
|
0.6250
|
0.5275
|
-0.1133
|
NS
|
0.4278
|
0.3625
|
102257
|
F: TGACTTGGTCAGGGACTTTGT
R: ATCCCTGGAGCTGATGTCCT
|
292
|
60
|
G/A
|
70
|
0.2750
|
0.2402
|
-0.0699
|
NS
|
0.2091
|
0.1375
|
103281
|
F: TGTAGTTCTTGTGATATATTGCACA
R: GGCCAACGAATGTTTGGGAC
|
336
|
60
|
G/C
|
83
|
0.3000
|
0.3241
|
0.0323
|
NS
|
0.2688
|
0.2000
|
105060
|
F: GGCTTCGGCGATTTTCACG
R: CCGTTCAGCGTTGACAGTTC
|
306
|
60
|
G/A
|
106
|
0.4000
|
0.3532
|
-0.0684
|
NS
|
0.2879
|
0.2250
|
115993
|
F: CGTTTCCGTGTTGTGTGGAA
R: AACGGCGTAAAACCCAATCA
|
330
|
59
|
C/G
|
57
|
0.2250
|
0.3484
|
0.2012
|
NS
|
0.2996
|
0.1875
|
117340
|
F: CCAGCCAATCAAATCTTGCGG
R: CTGGAAAACTGCGCCGAATT
|
371
|
60
|
G/A
|
96
|
0.1500
|
0.1405
|
-0.0307
|
NS
|
0.1291
|
0.0750
|
117387
|
F: TCCTGTGGAGCCATTGAAGT
R: GCCCATGGACATCAATGATGG
|
332
|
59
|
C/T
|
31
|
0.8250
|
0.4908
|
-0.2598
|
**
|
0.3672
|
0.4125
|
133437
|
F: TTTGCTATCCGAGACGCACC
R: CCTGAGGTTGAGGCAAGAGG
|
294
|
60
|
C/A
|
48
|
0.0750
|
0.0731
|
-0.0102
|
NS
|
0.0696
|
0.0375
|
133496
|
F: TTTTTCTGTAGAGAGAGATTTCCA
R: AGACAAAAGCTTCACAAAGGA
|
326
|
56
|
T/C
|
89
|
0.2500
|
0.3911
|
0.2060
|
NS
|
0.3285
|
0.2250
|
153242
|
F: AGCAAGAGAAACACAGCAGC
R: CGCTGTTGTGTTTCTCTGGC
|
328
|
60
|
G/A
|
97
|
0.9750
|
0.5060
|
-0.3221
|
***
|
0.3748
|
0.4875
|
159368
|
F: CACCGGTCAAGGACCTGTC
R: AGGACGGAGGGACCACTAAA
|
342
|
60
|
G/T
|
97
|
0.9750
|
0.5060
|
-0.3221
|
***
|
0.3748
|
0.4875
|
159555
|
F: ATTGAATGAAGACTGGCGGT
R: AACAGCAACTAAGACCCCGC
|
304
|
61
|
G/A
|
71
|
0.8750
|
0.5060
|
-0.2730
|
**
|
0.3748
|
0.4875
|
167472
|
F: AATTCGAGTTGCCGGACTGT
R: GGTTTCCATCAGGTACCCCG
|
302
|
60
|
T/C
|
58
|
0.2750
|
0.3168
|
0.0545
|
NS
|
0.2771
|
0.1625
|
167473
|
F: AATTCGAGTTGCCGGACTGT
R: ATACAGGAGTCGACGTCGGA
|
358
|
60
|
C/T
|
63
|
0.2750
|
0.3168
|
0.0545
|
NS
|
0.2771
|
0.1625
|
170581
|
F: ACCTTCTCTGTGAACGATCCA
R: ACCATCAGATCTGACACGGC
|
302
|
60
|
A/G
|
45
|
0.2250
|
0.2022
|
-0.0545
|
NS
|
0.1797
|
0.1125
|
186929
|
F: CTCGACTACTGAGCTTCGGC
R: GCCAGATCTGCGTCTTTCCT
|
342
|
60
|
T/C
|
60
|
0.4250
|
0.5389
|
0.0838
|
NS
|
0.4610
|
0.2875
|
186930
|
F: GACTACTGAGCTTCGGCCAA
R: CTCACGTGACGTCTGCAGAA
|
341
|
60
|
G/A
|
105
|
0.4250
|
0.5389
|
0.0838
|
NS
|
0.4610
|
0.2875
|
188818
|
F: TTCCGACACAGGTATGGACA
R: AGCCAAAACAGCATCCGGTA
|
340
|
60
|
A/G
|
57
|
0.9750
|
0.5060
|
-0.3221
|
***
|
0.3748
|
0.4875
|
188819
|
F: TTCCGACACAGGTATGGACA
R: TGTCAAATGGGTTGGTGCCT
|
345
|
60
|
C/T
|
69
|
0.9750
|
0.5060
|
-0.3221
|
***
|
0.3748
|
0.4875
|
189292
|
F: TTCAAGGCTGTGATTTTAGGGT
R: ACGCTCAAAGTACGAGTCCA
|
353
|
60
|
A/T
|
92
|
0.7250
|
0.4908
|
-0.1987
|
NS
|
0.3672
|
0.4125
|
189308
|
F: ATTCCGTACTAGCCACATGT
R: AAAGACCAGCGAGTCATGGG
|
355
|
60
|
C/G
|
89
|
0.9500
|
0.5051
|
-0.3114
|
***
|
0.3744
|
0.4750
|
190334
|
F: ATGCACTGATCCTGCTGGTT
R: GCTGTTGGTTTCCGCACAAT
|
336
|
60
|
C/A
|
64
|
0.1250
|
0.2085
|
0.2356
|
NS
|
0.1958
|
0.0625
|
191667
|
F: ATGGAAAGTGTGCGCTGGTA
R: AGTAGGCCACTGTGAAACGG
|
269
|
60
|
T/C
|
52
|
0.3250
|
0.5282
|
0.2087
|
NS
|
0.4613
|
0.2375
|
191668
|
F: ATGGAAAGTGTGCGCTGGTA
R: AGTAGGCCACTGTGAAACGG
|
269
|
60
|
G/C
|
102
|
0.3250
|
0.5282
|
0.2087
|
NS
|
0.4613
|
0.2375
|
192722
|
F: AAAACGACCGGCACATGTTT
R: ATCAATATGTGCCGGCCGTT
|
349
|
60
|
C/A
|
34
|
0.7000
|
0.6696
|
-0.0693
|
NS
|
0.5870
|
0.3500
|
192723
|
F: AAAACGACCGGCACATGTTT
R: ACACCTAGGCCCCATCAGAT
|
341
|
60
|
T/A
|
35
|
0.7000
|
0.6696
|
-0.0693
|
NS
|
0.5870
|
0.3500
|
193182
|
F: AGTTCCACGTACAATGCTAGAG
R: ACGCTGTTTCCGGCACATAA
|
311
|
61
|
C/T
|
84
|
0.4750
|
0.5275
|
0.0265
|
NS
|
0.4278
|
0.3625
|
202668
|
F: ATGATTCCACCTCGCTCACT
R: CGGCCATAAAACACCATGGT
|
274
|
59
|
T/C
|
86
|
0.0750
|
0.4839
|
0.7268
|
NS
|
0.4298
|
0.1375
|
216926
|
F: GAACGATTAGAGCGGGGCAT
R: TGCAGCTCTTCCGATCTTCC
|
322
|
60
|
A/T
|
78
|
0.1250
|
0.3225
|
0.4284
|
NS
|
0.2901
|
0.1375
|
227919
|
F: TCAGCACATTTTGGCGTTGG
R: AAGTGGCCGCTTTAAGCAAC
|
338
|
60
|
C/T
|
96
|
0.1000
|
0.2924
|
0.4842
|
NS
|
0.2471
|
0.1750
|
228342
|
F: ATTGCACAATATAGTGACATCTATG
R: AAGCGCACATCAATGAGACT
|
315
|
58
|
G/A
|
66
|
0.2750
|
0.3085
|
0.0512
|
NS
|
0.2583
|
0.1875
|
228862
|
F: TTCGGCAGTACAATCCCCAC
R: TGAAAACAATGGCGGACGTG
|
336
|
60
|
C/A
|
108
|
0.1750
|
0.3934
|
0.3720
|
NS
|
0.3530
|
0.0875
|
229977
|
F: ACCTCACTGTTTCCTTCCGG
R: TAACGCAACTCAACTTCGCG
|
268
|
60
|
T/C
|
108
|
0.4250
|
0.4617
|
0.0159
|
NS
|
0.3881
|
0.2625
|
236835
|
F: TCTGAGACACTGTGTGATTAAGAGA
R: ACGGTTGTAAGATGTTTGTGCC
|
299
|
60
|
C/A
|
75
|
0.5000
|
0.3797
|
-0.1423
|
NS
|
0.3047
|
0.2500
|
237216
|
F: AGCATTGCCTGAGAACAGTCA
R: AGTGGAAGGCAAGCATGTTG
|
323
|
60
|
G/C
|
89
|
0.6000
|
0.4861
|
-0.1111
|
NS
|
0.3648
|
0.4000
|
257954
|
F: TCAAACTCGAAGTGTTCATTGA
R: AACTCATTCGCCCCTGTGAG
|
294
|
60
|
A/C
|
59
|
0.5000
|
0.5304
|
0.0120
|
NS
|
0.4103
|
0.4750
|
258126
|
F: TAAGAGGGCACGGAAGAGGA
R: ACGCATCTGCTTAGACAAATGC
|
329
|
60
|
C/G
|
97
|
0.9500
|
0.5063
|
-0.3103
|
***
|
0.3750
|
0.5000
|
258935
|
F: ACACCTGTAAACACGACTTGC
R: AGAAAGGCCGTATAGCTGCG
|
270
|
60
|
T/A
|
47
|
0.5500
|
0.5215
|
-0.0542
|
NS
|
0.4244
|
0.3500
|
268378
|
F: TATCCGCTACCCCGCATAGA
R: TGCGAAGTCTACCAGAACCG
|
280
|
60
|
C/T
|
65
|
0.4000
|
0.5051
|
0.0999
|
NS
|
0.3969
|
0.3750
|
270177
|
F: TAACTGCATTGTGTTGGGCT
R: ACTGTTGATTACACCGGGCA
|
304
|
60
|
C/T
|
106
|
0.2250
|
0.2022
|
-0.0540
|
NS
|
0.1797
|
0.1125
|
270725
|
F: CGCTTGACGTGACTTCTGGA
R: GGCGTTTTGAGGCCTGTTATT
|
263
|
60
|
C/A
|
67
|
0.0750
|
0.1649
|
0.3572
|
NS
|
0.1553
|
0.0625
|
273467
|
F: CAAAATGCAGCCGTATCTGGA
R: CGGTTCCAATCAGTGAAACACC
|
343
|
60
|
T/C
|
73
|
0.1000
|
0.2684
|
0.4471
|
NS
|
0.2469
|
0.0500
|
277151
|
F: CTCAAGCCGTGGTGCTAAGA
R: CACACAAACGGAACCAACCA
|
317
|
60
|
T/A
|
62
|
0.0250
|
0.3579
|
0.8633
|
NS
|
0.3205
|
0.0625
|
286890
|
F: TCCTAAACTACAAAATAATTCAATCCT
R: ACATCCTGTCGTGCCTTGTT
|
344
|
60
|
A/T
|
50
|
0.4000
|
0.5418
|
0.1272
|
NS
|
0.4359
|
0.4000
|
286896
|
F: TTTTGAGAAACCTTTTGCGAA
R: TCGGAAGGTGAGGTTAAACGT
|
275
|
59
|
T/C
|
92
|
0.1000
|
0.2291
|
0.3782
|
NS
|
0.2138
|
0.0750
|
286910
|
F: TTCCATTTGTCAAATTCATCGAT
R: ACACTGTTGCCCAAAATGATGG
|
352
|
60
|
C/T
|
27
|
0.1000
|
0.1873
|
0.2897
|
NS
|
0.1769
|
0.0500
|
286921
|
F: CCCAGTACCCGTGTCATCAG
R: GCCATTGCACTGATGACGAC
|
268
|
60
|
T/C
|
97
|
0.1000
|
0.1873
|
0.2897
|
NS
|
0.1769
|
0.0500
|
286938
|
F: TCAGTTTGAATCACTGTGACA
R: GTCAGTTTTCTGCCACAGCG
|
299
|
60
|
G/A
|
86
|
0.1250
|
0.2066
|
0.2332
|
NS
|
0.1910
|
0.0875
|
286939
|
F: ATTCCCTAAGCCCTAGTGCC
R: GGATCACGATAAAACGCGGC
|
288
|
60
|
C/T
|
53
|
0.2250
|
0.5282
|
0.3841
|
NS
|
0.4430
|
0.3125
|
286945
|
F: ACCATTTTCTCCACGTCCCT
R: CGTTCTGCCAGGAGGTGATT
|
321
|
60
|
G/T
|
91
|
0.1750
|
0.4839
|
0.4562
|
NS
|
0.4298
|
0.1375
|
286946
|
F: TCGGACAATAGTTAGAGCAGCT
R: AAACCAGCAGGATCCATGCA
|
255
|
60
|
A/G
|
97
|
0.1250
|
0.1649
|
0.1240
|
NS
|
0.1553
|
0.0625
|
286949
|
F: GTTCGAAAACCAGCAGAATCCA
R: AAACCAGCAGCCGATCAGAA
|
256
|
60
|
T/C
|
95
|
0.1000
|
0.2266
|
0.3750
|
NS
|
0.2075
|
0.1000
|
286953
|
F: GCAACAGGGTCTTACTCGCT
R: CCGCGTTGTTTCAGTCGATC
|
303
|
60
|
T/G
|
86
|
0.3000
|
0.6127
|
0.3154
|
NS
|
0.5270
|
0.3500
|
286957
|
F: ATTCATGCCCTTTGGACCCC
R: TGACGGCAGGCCAGTTTTTA
|
332
|
60
|
T/G
|
45
|
0.4500
|
0.5177
|
0.0323
|
NS
|
0.4537
|
0.2250
|
286963
|
F: CTTCGCCAGCTCTACACTCC
R: GAGACGTGTGGAAGATGGGG
|
284
|
60
|
G/A
|
57
|
0.3500
|
0.5468
|
0.1898
|
NS
|
0.4662
|
0.3000
|
286970
|
F: TTCAGTTGTCGGGGAACTCG
R: ACACTTTCGTTTCTGAAGCGT
|
332
|
60
|
A/G
|
47
|
0.2000
|
0.5924
|
0.4777
|
*
|
0.5129
|
0.3000
|
286981
|
F: CGGTCAGCAATTATGGAAATGCA
R: CAGACGACATGCTCTCGTGT
|
274
|
60
|
A/C
|
55
|
0.3250
|
0.4617
|
0.1518
|
NS
|
0.3881
|
0.2625
|
286985
|
F: TGGGGTTTTACGACGTACTCA
R: TGCTGGATGTTGCTGTTTTCC
|
304
|
60
|
C/T
|
79
|
0.0750
|
0.3256
|
0.6156
|
NS
|
0.2973
|
0.1125
|
286986
|
F: TTCGCTGATCTGGGTGCTAC
R: AAGAAGAAACGGCGCTGTCA
|
337
|
61
|
A/C
|
98
|
0.3250
|
0.4560
|
0.1387
|
NS
|
0.4068
|
0.1625
|
286993
|
F: GCAATTGTTGATTCCAGCGC
R: TGAGAGTTTGGCGCTGGAAT
|
283
|
60
|
G/A
|
110
|
0.1500
|
0.3430
|
0.3798
|
NS
|
0.3114
|
0.0750
|
286997
|
F: TCGTTTTCCATAATACATTCATTCGA
R: TGATTGAGGTTTTCCGCCGT
|
335
|
60
|
G/A
|
34
|
0.1000
|
0.2266
|
0.3750
|
NS
|
0.2075
|
0.1000
|
287004
|
F: ACAATAACACGCTTTAACACACA
R: CGATCGCATCGCCAACAATT
|
278
|
60
|
A/T
|
82
|
0.0750
|
0.1655
|
0.3590
|
NS
|
0.1569
|
0.0375
|
287008
|
F: CGACACTTGTTAACGTTCGTCC
R: GGTGGAGAAACCCCTGGAAG
|
329
|
60
|
C/T
|
40
|
0.1500
|
0.2684
|
0.2670
|
NS
|
0.2469
|
0.1000
|
287013
|
F: TCATTGCATTAGCCAACAGC
R: AGCTTCCTGATGTTGCTGTTG
|
296
|
59
|
T/C
|
55
|
0.1000
|
0.3430
|
0.5375
|
NS
|
0.3114
|
0.1250
|
287019
|
F: ACGATTAGAGTGGGACATGGA
R: GCTCTGCCACGCTTGTTTAG
|
292
|
60
|
T/A
|
74
|
0.0750
|
0.2079
|
0.4553
|
NS
|
0.1942
|
0.0375
|
287020
|
F: TTAACCACCAGCTGCGACAA
R: GCTTCGCTTGTCCTCCTCTT
|
328
|
60
|
G/A
|
69
|
0.1250
|
0.2491
|
0.3171
|
NS
|
0.2308
|
0.0875
|
287033
|
F: TGGTTTCTCCTTCCATAAGTGT
R: AGCTCTTGTGAGGGATGTGC
|
282
|
60
|
T/C
|
40
|
0.3250
|
0.3668
|
0.0541
|
NS
|
0.2966
|
0.2375
|
287041
|
F: ACTTCAGCTTCACCACCCAG
R: CGTGTGTGATGGACCGGTAA
|
298
|
60
|
A/G
|
90
|
0.1500
|
0.4101
|
0.4499
|
NS
|
0.3680
|
0.1500
|
287045
|
F: AGTCAAACAGCAACAACGGC
R: CCGAAGCCTGTAATCCAGACA
|
262
|
60
|
T/C
|
66
|
0.2000
|
0.6367
|
0.5050
|
*
|
0.5501
|
0.4000
|
287057
|
F: ACGAGTTACTATTTTATATGTTGAACG
R: ACACCACAGCGTGCAATAGA
|
250
|
60
|
A/G
|
110
|
0.2000
|
0.3759
|
0.2862
|
NS
|
0.3372
|
0.1500
|
287062
|
F: ACAGCATATCATGACAAAGGTGT
R: GCGTTTGCATTGAGTACGGT
|
334
|
59
|
C/G
|
99
|
0.0500
|
0.1873
|
0.5516
|
NS
|
0.1769
|
0.0500
|
287065
|
F: ACATTGTCATTTGCACCACA
R: TCTGAAGAACAAGGGTGCCC
|
285
|
60
|
A/C
|
96
|
0.3500
|
0.4772
|
0.1383
|
NS
|
0.3813
|
0.3250
|
287083
|
F: TTCGCCGAAATACAGCAAAT
R: TTCGGCTGAAACTTGACGGA
|
353
|
60
|
C/G
|
49
|
0.0000
|
0.4101
|
0.9966
|
NS
|
0.3680
|
0.1500
|
287083
|
F: TCGCCGAAATACAGCAAATT
R: TCTCGATTGTGCAAGCATGG
|
328
|
59
|
T/C
|
106
|
0.1750
|
0.4782
|
0.4479
|
NS
|
0.4191
|
0.2125
|
287138
|
F: GGGGCCCATAGCGTGAATT
R: TATAAATCCGCCAGTCCGCC
|
307
|
60
|
T/A
|
79
|
0.3750
|
0.5453
|
0.1626
|
NS
|
0.4378
|
0.4125
|
287182
|
F: TGAAACGTCTACTTTATAACCTGCT
R: GTTGTCCACCTAGCCACGAA
|
337
|
60
|
G/C
|
64
|
0.1000
|
0.4266
|
0.6118
|
NS
|
0.3651
|
0.2250
|
287192
|
F: TTCCCACCAACTAGCGTCTG
R: TGAGGAAAGTTTGGACCATTTGA
|
313
|
60
|
A/T
|
107
|
0.0500
|
0.1873
|
0.5516
|
NS
|
0.1769
|
0.0500
|
287224
|
F: TCCAGGCAATATAATAAGTGGCGA
R: TATACAACAGTGCCGCGTGT
|
311
|
60
|
C/T
|
94
|
0.0750
|
0.1206
|
0.2179
|
NS
|
0.1155
|
0.0375
|
287240
|
F: TCTGTCCTCGAAGACCACCA
R: TGCCATATATTCTTGCCCCGG
|
273
|
60
|
C/A
|
47
|
0.0500
|
0.0978
|
0.2936
|
NS
|
0.0949
|
0.0125
|
287283
|
F: TGCAAGGCATAACATAAAAGAAA
R: TCTGGCGTTGGTTTCTGAGA
|
259
|
59
|
G/A
|
71
|
0.1000
|
0.1861
|
0.2875
|
NS
|
0.1736
|
0.0750
|
287292
|
F: AGGTCATAAATATAACGGATGACT
R: ACTTCGAGTTTAGGTGCCTGA
|
310
|
59
|
G/A
|
69
|
0.0750
|
0.0731
|
-0.0102
|
NS
|
0.0696
|
0.0375
|
287298
|
F: TCCCCAATCGTCAAAATGCA
R: ACATTCGGTATTCCAGAACCTGT
|
355
|
60
|
G/T
|
45
|
0.2500
|
0.4595
|
0.2735
|
NS
|
0.3981
|
0.2250
|
287301
|
F: ACACCTCCATTTTACAAACTGTCA
R: GCGGCGTTAAACCCCAATC
|
348
|
60
|
A/T
|
106
|
0.0750
|
0.2079
|
0.4553
|
NS
|
0.1942
|
0.0375
|
287340
|
F: TCCAACTGTTACAGATATACATCAACT
R: AGAACCCACTGAAATTTGTTGCT
|
282
|
59
|
C/A
|
50
|
0.2250
|
0.4136
|
0.2775
|
NS
|
0.3564
|
0.2125
|
287355
|
F: AGCATTTGCAAAGTGGAGTGC
R: GCTGGCAGATCTAGCTGTCC
|
330
|
60
|
C/G
|
86
|
0.1500
|
0.4899
|
0.5176
|
NS
|
0.4275
|
0.2250
|
287387
|
F: TTGTGCAGTTTTTAGAAAATGGA
R: ACACATTTCTTAACGTTGGGT
|
314
|
56
|
T/C
|
90
|
0.1500
|
0.4342
|
0.4726
|
NS
|
0.3803
|
0.2000
|
287412
|
F: TCCAAAGACAGCCTTAAGTGACT
R: ACAACTGAACCTGCCCGTAC
|
278
|
60
|
G/A
|
81
|
0.1000
|
0.1430
|
0.1640
|
NS
|
0.1359
|
0.0500
|
287413
|
F: ATCCACCGTTCGAAAGCAGT
R: TAATTCAATCCGCCTGGGCT
|
310
|
60
|
A/C
|
108
|
0.2000
|
0.3392
|
0.2403
|
NS
|
0.3029
|
0.1500
|
287424
|
F: TCGAGCAAAAATTAATTGAAAGCT
R: GTGTTAAGGCTGGGGAGGAC
|
283
|
60
|
A/G
|
109
|
0.2250
|
0.4250
|
0.2863
|
NS
|
0.3796
|
0.1625
|
287438
|
F: TCCTTGAAAGTTTCACGGGA
R: GGCACGAGATGTCCAAGGAA
|
321
|
60
|
C/A
|
91
|
0.0500
|
0.1434
|
0.4509
|
NS
|
0.1367
|
0.0125
|
287440
|
F: TTCTTTCTGTAAACATATGCCCA
R: ACCATAACAAAAACAGAAGCCA
|
314
|
57
|
T/C
|
71
|
0.1750
|
0.3554
|
0.3243
|
NS
|
0.3150
|
0.1625
|
287443
|
F: ACTGATCAGCGTAACTACAGGT
R: AGCTTGGCCAGAAACATCCA
|
353
|
60
|
A/G
|
97
|
0.2000
|
0.5025
|
0.4137
|
NS
|
0.4267
|
0.2750
|
287446
|
F: ATTCACTGTTTACTGTTTTTGTTTT
R: GATTGTGTCATCACGCGGTC
|
284
|
60
|
G/T
|
84
|
0.1000
|
0.1873
|
0.2897
|
NS
|
0.1769
|
0.0500
|
287478
|
F: GGTGTTGGTTTCATGCGACG
R: ACGTCACACAAAGGGGCATA
|
329
|
60
|
A/G
|
104
|
0.1250
|
0.5953
|
0.6454
|
***
|
0.5226
|
0.2125
|
287512
|
F: TTCCTGACCCTGCCAACATC
R: ACACCAGTCAAAAGATCTTCTGA
|
345
|
60
|
G/T
|
27
|
0.0250
|
0.2079
|
0.7469
|
NS
|
0.1942
|
0.0375
|
287513
|
F: ACAGTAAGATTAAGTTTACCTGAGCT
R: GGCCCATAATGGAGCTCGAA
|
336
|
60
|
G/A
|
48
|
0.0750
|
0.1206
|
0.2197
|
NS
|
0.1155
|
0.0375
|
287514
|
F: TTGCTGGTCATCTGAGGTGT
R: ACAAGTGACAGTGACCATCA
|
341
|
59
|
C/T
|
51
|
0.1000
|
0.1405
|
0.1617
|
NS
|
0.1291
|
0.0750
|
287523
|
F: GGTTTAAACCCATGCGCGTT
R: GCTGACGGTGTTGTTGTTGG
|
281
|
60
|
T/C
|
53
|
0.3500
|
0.5051
|
0.1662
|
NS
|
0.3969
|
0.3750
|
287534
|
F: AGAGTGAAGGGACTCAACCA
R: TGCGCATCCATGGCTTATCT
|
304
|
60
|
T/G
|
110
|
0.0750
|
0.2497
|
0.5247
|
NS
|
0.2323
|
0.0625
|
287536
|
F: ACCTTATCTTTTAAATGCACCTGT
R: TCGTTCATGCAGACAAGAGATGA
|
259
|
60
|
G/A
|
100
|
0.2000
|
0.4658
|
0.3805
|
NS
|
0.4120
|
0.2000
|
287578
|
F: TGTGCGCCCTGAATTACAGT
R: CGTGGTGCACAGTCAATTCC
|
331
|
60
|
T/G
|
54
|
0.1000
|
0.0962
|
-0.0164
|
NS
|
0.0905
|
0.0500
|
287581
|
F: TTCCAGTGGTGAATCCCGAA
R: ATAGCACTTTCGCCTGGAGC
|
353
|
60
|
A/G
|
55
|
0.1250
|
0.4206
|
0.5300
|
NS
|
0.3706
|
0.1875
|