Background: To observe the epithelial phenotypes after autologous cultivated oral mucosal epithelial transplantation (COMET), assess the changes in the oral mucosal epithelium after transplantation on the ocular surface, and identify possible influencing factors. Methods: We performed lamellar keratoplasty 6 months after initial COMET procedure on 2 patients with total limbal stem cell deficiency (LSCD) to further visual rehabilitation. The corneal buttons obtained during lamellar keratoplasty were examined by using immunohistochemistry and transmission electron microscopy (TEM). Results: Cell morphology of both excised corneal tissues resembled that of the normal cornea. They were positive for Cytokeratin3, Cytokeratin13, p63 and Zonula occludens-1. Expression of Cytokeratin12 was noted in the corneal epithelium of patient 1 but not found in patient 2. Conclusions: The oral epithelium transplanted onto the ocular surface could express corneal phenotypes after COMET, which might be related to the corneal microenvironment.