The literature search strategy employed
We used the following key terms; “antimicrobial” or “antibiotic” or “anti-infective agent”. No time and language restrictions were applied during database searching. Eight electronic databases were searched (PubMed, EBSCOhost, Web of Science, Cochrane Library, Scopus, International Clinical Trials Registry Platform (ICTRP), Mednar) for relevant literature.
Example of the search strategy developed and on PubMed database
(("primary health care"[mesh] OR primary care[tw] OR primary health*[tw] OR community health*[tw] OR community care[tw] OR community worker*[tw] OR clinic[tw] OR clinics[tw] OR “general practitioners” [mesh] OR general practi*[tw] OR family medicine[tw] OR family practi*[tw] OR “physicians, family” [mesh] OR family physician*[tw] OR family doctor*[tw] OR "physicians, primary care"[mesh])) AND (("anti-bacterial agents"[Pharmacological Action] OR "anti-bacterial agents"[MeSH Terms] OR "anti-infective agents"[Pharmacological Action] OR "anti-infective agents"[MeSH Terms] OR antibiotic*[tw] OR antimicrobial*[tw] OR antibacterial*[tw] OR anti-bacterial*[tw] OR anti-infective*[tw])) AND ("therapeutic use"[sh] OR "drug prescriptions"[mesh] OR "drug utilization"[mesh] OR “inappropriate prescribing” [mesh] OR “drug utilization review” [mesh] OR "practice patterns, physicians'"[mesh] OR use[tiab] OR user*[tiab] OR used[tiab] OR overuse*[tiab] OR underuse*[tiab] OR misuse*[tiab] OR utiliz*[tiab] OR overutili*[tiab] OR underutili*[tiab] OR prescri*[tw] OR overprescri*[tiab] OR underprescri*[tiab])
Types of studies included in the review
We included studies conducted in East Africa that reported the proportion of patients receiving any antimicrobial prescription irrespective of facility setting or level. The study types included in the review were cross-sectional studies, cohort studies, and randomized controlled trials (RCTs) and non-RCTs.
Reviews of all kinds, economic evaluation studies, qualitative studies, mathematical modelling and non-primary research publications such as: commentaries, editorials and conference proceedings were not eligible for this review. Studies reporting antimicrobial use in animals i.e., those focused on veterinary use of antimicrobials, and those focused on special cohorts of patients such as surgical prophylaxis where use of antimicrobials biotics is justified, were excluded.
Data collection and analysis
Selection of studies
All outputs of electronic database search were imported into Rayyan Software for screening and selection (41). Two of the researchers independently screened 100% titles and abstracts for inclusion of potentially eligible studies obtained from the database searches. The first reviewer (JA), collected full-text articles/publications of potentially eligible studies and then JA and the second reviewer (PKO) independently screened 100% of full-text articles for inclusion. Where disagreement occurred between the two reviewers, the last reviewer (EM) was consulted. Each step of the study selection process was documented and where a study was excluded, the reason(s) for exclusion was recorded and entered the PRISMA flow diagram
Data extraction and management
Data were independently extracted in text, tables and figures of the included studies by the first and second researchers and recorded on a standardized, pre-designed extraction form. In the case of unclear data, corresponding author was contacted for clarifications. Data management was the duty of the first reviewer (JA) in consultation with the second reviewer (PKO). Completed data extraction forms were maintained on both a password secured laptop and USB memory stick and exported to STATA for analysis.
The following data points were extracted from the included studies:
Study characteristics: year(s) of data collection, study design, source of data, population or participants and objectives of the study.
Study setting: country, income level, health facility level.
Outcome measures: number of individuals receiving at least one antimicrobial prescription to the number of persons attending a given health facility within a specified time period.
Risk of bias assessment
The methodological quality of studies including risk of bias was assessed using a checklist to assess for internal and external validity. A modified check list originally developed by Hoy and colleagues (42) was used to score; sampling strategies used, outcome assessment, outcome measurement and statistical reporting and higher overall scores represented higher methodological quality. Each article was independently scored by the first and second reviewers (JA and PKO) in consultation with the research advisors (EM and GM).
Treatment of missing data
Authors of articles with missing data were contacted to provide the missing data points. In cases where the missing data were impossible to obtain, full descriptions are provided about the nature of the missing data and the implications on the results of this systematic review was described.
Assessment of Heterogeneity
Forest plots were used to assess the presence of statistical heterogeneity. We assessed heterogeneity by calculating Chi2 (thresholdP>0.1) and | statistics (threshold |2>40%). The values of |2 were categorized for heterogeneity as follows: “not important” (0 to 40%), “moderate” (41 to 60%), “substantial” (61 to 80%), and “considerable” (81 to 100%). Where “not important” or “moderate” heterogeneity exists between studies (|2≤40%), the outcomes were pooled in a meta-analysis and reported using forest plots. Where “substantial” or “considerable” heterogeneity exists between studies (|2>40%), the outcomes were pooled and reported in narrative form using forest plots.
Data synthesis
Data from the included studies were combined using random effects model to account for variability between studies. This is because substantial heterogeneity between-studies was anticipated considering the different study designs included in the systematic review. STATA software (College Station, Texas 77845 USA) was used to perform the meta-analysis. Subgroup analysis was done to assess antimicrobial use patterns in different East African countries.
Sensitivity analysis
Sensitivity analyses was performed to assess if methodological differences in outcome measurement influenced the review results.