Materials
- Patients and tumor tissue
In this study, 40 pairs of specimens were collected, including ESCC cancer tissues and normal esophageal tissues. These tissue were from the patients under thoracic surgery in 2018. Basic information and clinicopathological data of ESCC patients were collected. The normal tissue adjacent to the cancer required ≥5cm from the edge of the tumor tissue.
Clinical and pathological data:
Of the 40 patients with esophageal squamous cell carcinoma in this study, 34 were male (85%) and 6 were female (15%); 31 were over 60 years old (77.5%) and less than 60 years old 9 patients (22.5%); 13 patients with lymph node metastasis (32.5%), 27 patients without lymph node metastasis (67.5%); 11 patients with T1 to T2 (27.5%), 29 patients with T3 to T4 (accounting for 72.5%) (Table 1).
Table 1 Clinicopathological data of 40 patients with ESCC
Clinical information
|
No.
|
%
|
Gender
|
|
|
Male
|
34
|
85
|
Female
|
6
|
15
|
Age
|
|
|
>60
|
31
|
77.5
|
≤60
|
9
|
22.5
|
Tumor location
|
|
|
High in chest
|
0
|
|
Middle in chest
|
14
|
35
|
Low in chest
|
26
|
65
|
Tumor size
|
|
|
>4cm
|
22
|
55
|
≤4cm
|
18
|
45
|
Differentiation
|
|
|
High
|
4
|
10
|
Middle
|
19
|
47.5
|
Low
|
17
|
42.5
|
Infiltration
|
|
|
Mucosa and submucosa
|
5
|
12.5
|
Superficial muscularis
|
6
|
15
|
Deep muscularis
|
11
|
27.5
|
All
|
18
|
45
|
Lymph node metastasis
|
|
|
Yes
|
13
|
32.5
|
No
|
27
|
67.5
|
Cell lines:
The human ESCC cell lines (KYSE-150, KYSE-450, KYSE510, TE-10, TE-11) were purchased from Shanghai Meixuan Biotechnology Co., Ltd. The human-derived normal esophageal epithelial cell line (Het-lA) was purchased from Shanghai Meixuan Biotechnology Co., Ltd. All cell lines were preserved and cultured in our central laboratory.
- Reagents
Primers:
Name
|
Forward
|
Reverse
|
hGAPLINC
|
CCACATCCAGGGGCTATCAA
|
CACAATCAGGGCTCTTGGACT
|
hGAPDH
|
GCACCGTCAAGGCTGAGAAC
|
TGGTGAAGACGCCAGTGGA
|
Reagents:
Name
|
Company
|
CAT.
|
RNA extraction kit
|
Shanghai Meixuan Biological Technology Co., Ltd.
|
MX0015
|
RT reagent Kit
|
Takara Co., Ltd.
|
RR047A
|
SYBR Premix Ex Taq
|
Shanghai Meixuan Biological Technology Co., Ltd.
|
MX200017
|
Nuclease-free water
|
Ambion Co., Ltd.
|
#AM99386
|
Ethanol
|
Sinopharm Group Chemical Reagent Co., Ltd.
|
AR10009218
|
Chloroform
|
Sinopharm Group Chemical Reagent Co., Ltd.
|
2006-06-08
|
CCK-8 cell proliferation and cytotoxicity detection kit
|
Biyuntian Co., Ltd.
|
C0037
|
Fetal bovine serum
|
Hyclone Co., Ltd.
|
Sh30084.03
|
Annexin V-Alexa Fluor647/PI Apoptosis Detection Kit
|
Solarbio Co., Ltd.
|
CA1050
|
Methods
- Q-PCR
Sample preparation:
Tissue samples: After taking out fresh samples, freeze them with liquid nitrogen as soon as possible and store at -80 degrees
Cell sample: Digest the cells using a cell scraper or trypsin, and then centrifuge at 12000rpm/min for 5 minutes. Collect the cells and store at -80 degrees.
Other samples: Save the samples as soon as possible -80 degrees.
Total RNA extraction:
After cutting the tissue sample into small pieces, liquid nitrogen is ground (50mg) into a powder and transfer to a 1.5ml tube without RNase (cell samples and other liquid samples do not need to be ground, skip to the next step directly).
700ul of lysate per tube, 200ul of sample to be extracted/ground sample, vortex for 10s until completely mix. Add 20ul proteinase K solution and 20ul magnetic beads to obtain purified RNA. Short-term storage at -20 degrees, long-term storage at -80 degrees.
Reverse transcription of RNA into cDNA:
Genomic DNA removal reaction: Prepare the reaction solution for removing genomic DNA according to the ingredients in Table 2 on ice. The reaction mixture (Master Mix) should be prepared according to the number of reactions +2, and then transfer into reaction tubes. Finally, RNA samples are added to perform various reactions.
Table 2 Reaction soulution
5×gDNA Eraser Buffer
|
2.0μl
|
Total RNA
|
1μg
|
gDNA Eraser
|
1.0μl
|
RNase Free dH2O
|
up to 10μl
|
Reverse transcription reaction: Prepare the reverse transcription reaction solution according to the ingredients in Table 3 on ice. First prepare the reaction mixture (Master Mix) according to the reaction number +2, and then dispense 10μl into the reaction tube to ensure the accuracy of the solution preparation. Perform a reverse transcription reaction immediately after gently mixing.
Table 3 Reaction solution
Genomic DNA removal reaction solution
|
10.0μl
|
PrimeScript RT Enzyme Mix I
|
1.0μl
|
RNase Free dH2O
|
4.0μl
|
5×PrimeScript Buffer 2
|
4.0μl
|
RT Primer Mix
|
1.0μl
|
Total
|
20μl
|
qRT-PCR:
Prepare PCR reaction solution on ice according to the ingredients in Table 4. After preparing the solution, perform Real Time PCR reaction immediately. After the test, confirm the Real Time PCR amplification curve and melting curve, and calculate the 2-△△ct value.
Table 4 PCR Soulution
SYBR®Premix Ex Taq(Tli RNaseH Plus)(2×)
|
10.0μl
|
ROX Reference Dye(50×)
|
0.4μl
|
PCR Reverse Primer(10μM)
|
0.4μl
|
PCR Forward Primer(10μM)
|
0.4μl
|
DNA
|
2.0μl
|
dH2O
|
6.8μl
|
Total
|
20.0μl
|
- Cell culture
The cells are cultured by complete medium (containing 90% DMEM high glucose + 10% fetal bovine serum) under sterile conditions, placed in a 37°CO2 incubator.
Cell infection:
When the healing degree of the transfected cells reaches 80%, the lentivirus can infect the cells, and the complete culture medium does not contain double antibodies. Lentivirus was added to the cell culture fluid according to different MOI values in the preliminary experiment. After 8h, change the fresh culture medium and continue cultivating for 24h.
- CCK-8 assay
Collect cells in different groups, adjust the cells to 106 cells/ml, and add 100μl of cell suspension to the 96-well plate. Adjust the incubator to 37°C, 5% CO2 conditions, and then put into the culture plate, incubate for 72h. Add 10μl CCK-8 solution to each well and continue to incubate the plate in the incubator for 1-4 hours. The absorbance at 450 nm was measured with a microplate reader.
- Transwell assay
Resuspend cells in basal medium and count, adjust the number of cells to 5*105 power/ml. According to different groups, inoculate 5*104 cells in the transwell chamber, add 500μl of fresh medium containing 20% FBS in the lower chamber, gently shake the cells to distribute them evenly, and incubate at 37 degrees 5% CO2 for 12h. Take out the transwell chamber, carefully wipe off the cells that have not passed through the chamber with a cotton swab, and fix it with 4% paraformaldehyde for 10 minutes. Dye with crystal violet dyeing solution for 5 minutes, and wash until the basement membrane is transparent. Observe, photograph, count and analyze under the microscope.
- Apoptosis assay
Cell preparation:
The cell suspension is prepared by digesting the cultured cells with trypsin. Take out 10μl of cell suspension for cell counting, and then dilute with complete medium to a concentration of 100,000 cells/ml. Cell suspension was added to the 6-well culture plate with a volume of 2 ml per well. When the cell growth reached 70% confluence, the cell culture fluid was discarded and the cells were collected after 16 hours of culture.
Annexin V- Alexa Fluor647 cell apoptosis:
Move the cell culture fluid into a suitable centrifuge tube, wash the adherent cells once with PBS, and digest the cells with an appropriate amount of trypsin cell digest solution (which may contain EDTA). Incubate at room temperature. When the adherent cells are gently blown down, remove the pancreatin cell digest. It is necessary to avoid excessive digestion of pancreatin during the process. Add the cell culture fluid collected in step 2A and mix well. Transfer to 1000g in a centrifuge tube and centrifuge for 5 minutes, then discard the supernatant. After collecting the cells, resuspend the cells gently with PBS and count. Take 50,000-100,000 resuspended cells, centrifuge at 1000g for 5 minutes, discard the supernatant and add 195μl Annexin V-FITC binding solution to resuspend the cells gently. Add 5μl Annexin V-Alexa Fluor647 and mix gently. Add 10μl propidium iodide staining solution and mix gently. Incubate at room temperature (20-25°C) in the dark for 10-20 minutes, then place in an ice bath. Immediately perform flow cytometry.