Materials
All cell culture plastics were purchased from Corning (Corning, NY) and Sarstedt (Sarstedt, Germany). Chemicals of analytical grade were obtained from Sigma-Aldrich (St Louis, MI), unless stated otherwise. All used antibodies and their respective technique are described in Supplementary Table 1.
Cell line cultures
BV2 murine microglia cell line was kindly supplied by Dr Ana Raquel Santiago (Faculdade de Medicina da Universidade de Coimbra). Cells were grown in RPMI-1640 medium (Sigma-Aldrich), supplemented with 10% foetal bovine serum (FBS, Thermo-Fisher Scientific), 4 mM L-glutamine (Thermo-Fisher Scientific), penicillin (100 units/mL) and streptomycin (100 µg/mL) (Thermo-Fisher Scientific). CAD mouse catecholaminergic neuronal cell line was gently provided by Dr Federico Herrera (Faculdade de Ciências da Universidade de Lisboa). DMEM/F12 was used as basal medium (Thermo-Fisher Scientific) and supplemented with 8% FBS (Thermo-Fisher Scientific), penicillin (200 units/mL) and streptomycin (200 µg/mL) (Thermo-Fisher Scientific). For differentiation, growing medium was replaced by a serum free DMEM/F12 supplemented solution. SH-SY5Y human neuroblastoma was used. For cell maintenance, DMEM/F12 was used as basal medium (Thermo-Fisher Scientific) and supplemented with 8% FBS (Thermo-Fisher Scientific), penicillin (200 units/mL) and streptomycin (200 µg/mL) (Thermo-Fisher Scientific). All cell lines were maintained in a humified incubator at 37°C and 5% CO2.
Primary cell cultures
Animals were housed in standard laboratory conditions with free access to water and standard rodent chow. All animal experiments were performed with the approval of the i3S Animal Ethics Committee and in accordance with European Union Directive on the protection of animals used for scientific purposes (2010/63/EU) and the Portuguese Law that transposes it (Decreto-Lei n.º 113/2013). All efforts were made to minimize animal suffering. Neuron hippocampal cell cultures were isolated from embryonic day 18 Wistar rats. Pregnant females were euthanized in a CO2 chamber, their abdominal region was pulverized with 70% ethanol and opened using surgical scissor and tweezers. Embryos were retrieved, decapitated and the brains were placed in a Petri dish containing Hank's Balanced Salt Solution (HBSS, Thermo-Fisher Scientific) supplemented with 100 µg/mL Gentamicin (Lonza). The brains were dissected under a magnifying glass and the hippocampi were collected. Hippocampal tissue was incubated for 15 minutes at 37°C with 1.5 mg/mL of trypsin (Thermo-Fisher Scientific) and after allowing the hippocampi to sediment, the supernatant was removed and a 10% FBS (Thermo-Fisher Scientific) solution was added. Following gentle agitation, the supernatant was discarded, and a washing step was performed with fresh HBSS. The supernatant was again removed and Neurobasal medium (Thermo-Fisher Scientific) supplemented with 25 µM Glutamate (Sigma-Aldrich), 0.5 mM L-glutamine (Thermo-Fisher Scientific), 100 µg/mL Gentamicin (Lonza) and 1% B27 supplement (Thermo-Fisher Scientific) was added, and the tissue was dissociated by thorough pipetting. The suspension was then put through a 70µm cell strainer, collected and cells were counted with a Neubauer counting chamber. Neurons were plated on 24 multi-well plates (100 000 cells/well), on top of Poly-D-Lysine (PDL, 1 mg/mL, Sigma-Aldrich) coated glass coverslips. Cells grew in vitro for 10 days before any analysis was carried forward, with fresh medium being added after seven days in culture.
Mixed glial cell (MGC) cultures were obtained from cortices of 2-day old Wistar pups. Animals were quickly sacrificed, with brains being removed and dissected consequently in HBSS (Thermo-Fisher Scientific) with penicillin (100 units/mL) and streptomycin (100 µg/mL) (Thermo-Fisher Scientific). White matter and meninges were discarded, and the remaining tissue was collected and mechanically homogenized. The cell suspension was passed through a 25-gauge syringe and incubated with 0.1 U/mL DNAse I (Zymo) and 1.5 mg/mL trypsin (Thermo-Fisher Scientific) for 15 minutes at 37°C. After incubating, trypsin was inactivated by adding DMEM GlutaMAX (Thermo-Fisher Scientific) supplemented with penicillin (100 units/mL), streptomycin (100 µg/mL) (Thermo-Fisher Scientific), 10% FBS (Thermo-Fisher Scientific) and the suspension was centrifuged afterwards (550 g, 15 minutes). The resulting supernatant was carefully discarded, and the pellet was resuspended in the same medium and put through a 100 µm cell strainer. The obtained suspension was distributed equally into 75cm2 t-flasks (2 brain per flask) to make a total media of 10mL per flask. Prior to adding the cells, the t-flasks were coated with 1 mg/mL PDL (Sigma-Aldrich) for 1 hour. The cell medium was changed every other day.
Primary microglia cells were obtained from 10-day-old MGC cultures, which were placed on an orbital shaker incubator for 2h at 200 rpm. The cell suspension was collected, centrifuged (260 rcf, 10 minutes) and the supernatant was discarded. The pellet was resuspended in DMEM/F12 (Thermo-Fisher Scientific) and cells were counted using a Neubauer counting chamber. Microglia cells were always obtained from either 10 (shake 1) or 17 days in vitro (DIV, shake 2) MGC cultures. Older cell cultures were not considered for this. Microglial cells were plated on 24 multi-well plates, with DMEM/F-12 GlutaMAX (Thermo-Fisher Scientific) and 4% L-glutamine (Sigma-Aldrich), penicillin (10 units/mL) and streptomycin (10 µg/mL) (Thermo-Fisher Scientific) and 10% FBS (Thermo-Fisher Scientific) supplement.
Cell culture treatments
For neuroinflammatory assay, BV2 cells were seeded onto multi-well plates (10 x 104 cells per well), treated with ALF826 (50µM) for 24h before LPS (Lipopolysaccharide, 500 ng/mL, Sigma-Aldrich) was added for another 24h. Subsequently, the BV2 microglia conditioned media was collected and centrifuged for 5 minutes, 500g (Fig. 1A). Simultaneously, CAD neurons were seeded (6 x 104 cells per well) and 24h later differentiating medium was added. After 48h of differentiation, neuronal supernatant was removed, and CAD were challenged for one day with BV2 microglia conditioned media.
For neurotrophic assay, BV2 cells (10 x 104cells per well) were treated for 48h with ALF826 (50µM), then medium was collected and centrifuged (5 minutes, 500g). The conditioned medium (microglial culture supernatant) was added into 48h-differentiated CAD neuronal culture. t-BHP at 7.5 and 10 µM was added into the CAD neuronal culture to promote cell death for 24h, with or without the presence of BV2 microglia conditioned medium, when mentioned (Fig. 7A). To assess the effect of purinergic signalling on neuron-microglia communication, 48h-differentiated CAD neurons were treated, simultaneously, with microglia conditioned media and adenosine receptor antagonists SCH-58261 (1 and 5 µM) and Dipropylcyclopentylxanthine (DPCPX, 25 and 50 µM). Primary culture of microglia derived from 10 or 17 DIV MGC cultures was collected and plated on 24 multi-wells (7x105 cells/well). 24h after seeding, cells were treated with 50 µM of ALF826 for 24h then with 10 ng/mL of LPS for another 24h. Microglia medium was collected, centrifuged at 500 g for 5 min and its supernatant was used as conditioned medium. 50% volume of neuronal medium of 10 DIV hippocampal neurons cultured in 24 multi-well plates was replaced by microglia conditioned media. Neuronal cells were analysed following 24h.
Reagents and solution preparation
ALF826 was provided by Proterris (Portugal) Lda. Stock solutions of 2.5mM were prepared by dissolving the compound in Dimethyl sulfoxide (DMSO, Sigma-Aldrich) and diluting it 1/10 in a NaHCO3 solution (0.1mM, pH 8.3). ALF826 was then filtered, aliquoted and stored at -80°C at a final concentration of 2.5 mM. ALF-826 has a half-life of 37 min in Hepes 7.4 buffer. Its cytotoxicity is negligeable at 100µM (98% survival of RAW246.7 macrophages at 24h) and its CO effective load is ca. 3 equivalents of CO per mol (Information provided by Proterris (Portugal) Lda.)
For the preparation of the depleted form of ALF826 (iALF826), the compound was dissolved in DMSO, left for 24h at room temperature to allow for the dissociation of the CO groups from the molecular scaffold and subsequently diluted in 1/10 in a NaHCO3 solution (0.1mM, pH 8.3). iALF826 was then filtered, aliquoted and stored at -80°C at a final concentration of 2.5 mM.
Fresh CO gas solutions of CO were prepared by saturating PBS, bubbling 100% of CO compressed gas (Linde, Germany) for 30 minutes, yielding a 10− 3 M stock solution. CO concentration in solution was measured spectrophotometrically, by the conversion of deoxymyoglobin to carbon monoxymyoglobin, in an assay previously described by Motterlini et al. [53].
Flow Cytometry
Neuronal cell viability assay
CAD neurons were collected by trypsinization and stained with 1ng/mL of Propidium Iodide (PI, Thermo-Fisher Scientific) for 15 minutes at 37°C. Cell viability was analysed by flow cytometry using the FACS Canto II (BD Biosciences). 488nm laser line was used for excitation and PI was read in the FL-3 channel in the linear scale. Appropriate controls, such as positive staining controls and unstained samples were always carried out. Data analysis was performed with the FlowJo software (BD Biosciences).
Microglia reactivity assay
BV2 cells were collected by scrapping and stained with 500 ng/mL of PE/Cy7 (Phycoerythrin/Cyanine 7) anti-mouse CD11b antibody (BioLegend) for 15 minutes at 37°C. Microglia reactivity was analysed by flow cytometry using FACS Canto II (BD Biosciences). 488nm laser line was used for excitation and reactivity levels were determined by reading sample’s PE/Cy7 Median Fluorescence Intensity in the FL-4 channel in the linear scale. Appropriate controls, such as positive staining controls and unstained samples were always carried out. Subsequent data analysis was performed using FlowJo software (BD Biosciences).
Enzyme-linked immunosorbent assay
Enzyme-linked immunosorbent assay (ELISA) was performed to measure Tumour necrosis factor a (TNF-a), Interleukin-1 ß (IL-1ß) and IL-10 microglia supernatant levels, using the respective Standard ABTS ELISA Development Kits (PeproTech). For Glial cell-derived neurotrophic factor (GDNF) and Brain-derived neurotrophic factor (BDNF), different kits were used (GDNF ELISA Kit (Abcam), Human/Mouse BDNF DuoSet ELISA (R&D)). Microglia culture media was collected and centrifuged to remove cellular debris, and the pellet was discarded. The resulting supernatant was kept at -80°C until analysis. All experiments were performed in accordance with the respective manufacturer’s instructions. Absorbance values were measured at 415nm, with wavelength correction set at 560nm, using an Infinite F200 PRO microplate reader (Tecan).
Griess reaction assay
Nitrite of microglia supernatant was quantified by Griess reaction colorimetric test. Microglia culture media was collected and centrifuged to remove cellular debris and subsequently incubated with Griess reagent (1:1 ratio, Sigma-Aldrich) for 10 minutes at room temperature (RT), protected from light. Absorbance was measured at 540 nm using an Infinite F200 PRO microplate reader (Tecan). Nitrite concentration was calculated with reference to a standard curve generated with known concentrations of sodium nitrite (NaNO2, Sigma-Aldrich).
Immunoblotting
Cell extracts were washed several times with ice-cold PBS and lysed with RIPA (Radioimmunoprecipitation assay) buffer (50 mM Tris-HCl, pH 6.8, 50 mM NaCl (w/v), 0.1% SDS (w/v), 1% sodium deoxycholate (w/v), 1% Triton X-100 (v/v), 10% Glycerol (v/v), 1% protease inhibitor cocktail (v/v). Protein concentration was determined with a Pierce BCA Protein Assay Kit (Thermo-Fisher Scientific), following manufacturer’s instructions. Absorbance values were registered at 560 nm using an Infinite F200 PRO microplate reader (Tecan). A Bovine Serum Albumin (BSA, Merck) standard curve was constructed to determine protein concentration.
Equal amounts of protein were separated by sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE) on a polyacrylamide gel (10% gel unless stated otherwise), with a NZYColour Protein Marker II (NZYtech) being used as band size reference. Proteins were then electrically transferred onto an Amersham Protran 0.45 NC nitrocellulose membrane (GE LifeSciences) and blocked with 5% (m/v) BSA in T-TBS for 1h. Membranes were labelled consecutively with primary and secondary antibodies as indicated in Supplementary Table 1. Immunoblots were exposed to ECL Clarity Western Detection Reagent (Bio-Rad) 5 minutes and the reactive bands were detected after the membranes were exposed to X-ray film (Chemidoc Touch Imaging System, Bio-Rad). The resulting area and intensity of the bands were quantified with ImageLab software (Bio-Rad). ß-actin was used as internal loading control unless otherwise is stated.
ROS generation assay
ROS, in particular hydrogen peroxide generation, were measured following the conversion of 2’,7’-dichlorofluorescein diacetate (H2DCFDA) (Invitrogen) to fluorescent 2’,7’-dichlorofluorescein (DCF). BV2 microglia cells were seeded (\(9\times {10}^{3}\) cells/well) on 96-well black flat bottom plates and treated with ALF826 and/or LPS, as described previously. After treatment, microglia supernatant was removed, and cells were washed twice with ice-cold PBS and treated for 15 minutes with 5 µM of H2DCFDA. Cells extracts were subsequently washed, and fluorescence intensity was measured using a Tecan Infinite F200 PRO microplate reader (?ex 485 nm/?em 530 nm). ROS generation was calculated as increase over baseline levels, determined for untreated cells and normalized to total protein quantification for each condition.
Immunofluorescence microscopy
Cells growing on glass coverslips were fixated with 4% (v/v) PFA (paraformaldehyde) and 4% (w/v) sucrose solution (20 minutes at RT), permeabilized with 0.3% (v/v) Triton X-100 solution (15 minutes, RT) and then blocked with BSA 1% (w/v) and Triton X-100 0.1% (w/v) for half hour at RT. Later, cells were probed with primary (2h incubation) and secondary (1h) antibodies, as described in Supplementary Table 1. Coverslips were mounted onto glass slides with Prolong mounting medium (with DAPI 1:1000 (4',6-diamidino-2-phenylindole, Thermo-Fisher Scientific). Washing with ice-cold PBS was always performed between steps. All antibodies used were diluted in 1%(v/v) BSA and 0,1%(v/v) Triton X-100 solution. Fixating, permeabilizing and blocking solutions were prepared in PBS. Images were captured with a Zeiss Z2 microscope, with at least 5 random micrographs being acquired, unless otherwise stated.
Neuronal morphology analysis
Neurite tracing was done using the NeuronJ Fiji plug-in (Erik Meijering) and following instructions present in an online manual provided by the developer (https://imagescience.org/meijering/software/neuronj/manual/). Neurites were labelled and clustered as primary (originating from cell soma), secondary (from a primary neurite) and tertiary (from a secondary neurite) processes. Software calculation determined total number of neurites per field as well as individual neurite length. Similarly, neuron skeleton reconstruction and Sholl analysis (quantification of intersections at concentric spheres originating from cell soma to 150µm, with radius every 5 µm) were performed using the Simple Neurite Tracer Fiji plug-in, in accordance to instructions present in online tutorials (https://imagej.net/Simple_Neurite_Tracer). For each individual experiment, four to six images were analysed for each glass slide.
High-performance liquid chromatography
To quantify microglial adenosine levels, supernatant from BV2 cells was collected from each well, and deproteinized in PCA 3M, centrifuged at 4ºC, 10 min, 13000 g. Then the supernatants neutralized (pH 6.8–7.2) with KOH/Tris (Sigma-Aldrich) as previously described by Conde and Monteiro (2004). Adenosine was quantified by HPLC with UV detection at 254 nm. The HPLC system consisted of an LC 10-AD pump, SIL-20AC autosampler, SPD-20 A/AV UV-VIS wavelength detector and Class VP software to analyse the chromatograms (Shimadzu, Kyoto, Japan). The analytical column was a Lichrospher 100 RP-18 (125 4 mm, i.d., particle size 5 µm, Merck, Madrid, Spain) protected by LichroCART 4–4 guard-columns (Merck, Madrid, Spain). The mobile phase was 100 mm KH2PO4 with 15% methanol, pH 6.5, run at a flux of 1.75 ml min − 1. External standards were prepared under the same conditions as the biological samples and adenosine identification and quantification was made against the standards. Adenosine supernatant levels were normalized to total protein microglial content.
Statistical analysis
Results are presented as mean ± standard error of the mean (SEM), with at least three biological replicates being performed for all experiments. All statistical analysis was performed using the Prism 6.0 software (GraphPad), with the one-way ANOVA test being performed.