2.1 Materials
2.1.1 Chemicals
Lipopolysaccharides (LPS; L2880) and X-tremeGENE™ siRNA transfection reagent (4476093001) were purchased from sigma (St. Louis, MO). Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), phosphate‐buffered saline (PBS), and penicillin–streptomycin, 4′,6‐diamidino‐2‐phenylindole (DAPI) were purchased from Life Technologies (Carlsbad, CA). Anti‐Tubulin antibodies (2148S), anti-GAPDH(2118S), anti-YAP(14074T), anti-β-Actin antibody(4967S), anti-TBP antibody(8515S), anti-TAZ(83669S), anti-p-YAP (Ser127) (13008T), anti-YAP/TAZ(93622), anti-MST1(14946S), anti-p- (Thr183)/MST2 (Thr180)(49332S), anti-VEGFR2(9698S), Anti-rat IgG (Alexa Fluor® 488 Conjugate), Anti-rabbit IgG (Alexa Fluor® 555 Conjugate) were purchased from Cell Signaling Technology (Beverly, MA).anti-CD31 antibody(ab7388), anti-claudin-5(ab131259), were purchased from Abcam (San Francisco, CA). Anti-ZO-1 antibody (40-2200), anti-TDP43 (c-terminal) antibody(12892-1-AP), anti-TDP43 antibody (PA5-17011), BrdU™ Assay Kit(Alexa Fluor™ 488)(A23210), EdU Cell Proliferation Kit for Imaging(Alexa Fluor™ 488)(C10337), Ki-67 antibody (69-5698-82), and MTT Cell Viability Assay (V13154) were purchased from ThermoFisher Scientific (Waltham, MA). Cell Counting Kit-8 was purchased from Dojindo Molecular Technologies (Rockville, MD).
2.2 Methods
2.2.1 Primary brain endothelial cell isolation, treatment, transfection
The method of Primary brain ECs isolation from C57BL/6 mice brains was described previously[17]. Primary brain ECs were infected with a lentivirus containing shRNA targeting YAP and TAZ or adenovirus (YAPS112A) (gifts from Mei Xin, Cincinnati Children’s Hospital, Cincinnati, OH, USA). The transfection details have been described previously[12, 18, 19].
2.2.2 The bEnd3 cells line culture, treatment, transfection
In the present study, the mouse brain-derived vascular endothelial cells line (bEnd3 cells ) were cultured in DMEM medium with 10% FBS and penicillin-streptomycin at 37°C with 5% CO2. Then, the bEnd3 cells were pretreated with DMEM serum‐free medium containing LPS (0.1, 0.3, 0.5, 0.7, 1ug/mL) for 24 hours. The bEnd3 cells (4×105 cells per well) were seed onto 6-well plates overnight to reach 70% confluence for transfection. The pCMV6-AC-Myc vector (PS100003, OriGene Technologies, Rockville, MD, USA) encoding mutant mouse TAR DNA binding protein (Tardbp) (NM_145556) C-terminal fragments (CTF35, 978bp) was transfected into cells for 4.5 hours using Lipofectamine 3000 (Thermo Fisher Scientific), then replaced with complete medium to culture another 48 hours at 37°C, which was collected for use in subsequent experiments. The mouse Tardbp43 siRNA ON-TARGETplus SMARTPool (L-040078-01-0005) and ON-TARGETplus non-targeting pool (D-001810-10) (Horizon Discovery, USA) were transfected into cells for 4.5 hours using X-tremeGENE™ siRNA Transfection Reagent (4476093001, sigma, USA) for 5 hours, then replaced with complete medium to culture another 48 hours at 37°C, which was collected for use in subsequent experiments.
2.2.3 Oxygen-glucose deprivation (OGD)
Hypoxia was induced by placing cells in the incubator (Thermo Scientific™ Heracell 150i) at 37°C, and introducing a flush with 95% N2/5% CO2 gas until the complete removal of O2. The oxygen level was maintained at 1%. Aglycemia was performed by using Gibco cell culture medium without D-glucose. For experiments using OGD and reperfusion (OGD/R) conditions, the bEnd3 cells were kept in OGD for 4 h followed by normal growth condition and normoxic atmosphere for an additional 24 h.
2.2.4 Cell viability assays
The viability of primary brain ECs and the bEnd3 cells were evaluated by MTT and CCK-8 assays following the manufacturers’ instructions. The data are presented as a percentage of the value obtained from cells incubated in fresh medium only.
2.2.5 Immunocytochemistry
For immunocytochemistry, cells were seeded at 0.8×106 on 1.5‐mm2 coverslips for 24 hours. After treatments or transfection, the cells were fixed with 4% ice cold paraformaldehyde for 20 minutes at 4°C. The cells were then air dried, followed by blocking and permeabilization with 1% BSA in PBS with 0.1% Triton for 30min. After that, primary brain ECs were stained with CD31 antibody (1:100) and YAP antibody (1:200), or the bEnd3 cells were stained with CD31 antibody (1:100) and TDP43 antibody (1:100), TDP-43 (C-terminal) antibody (1:100), claudin-5 antibody, or ZO-1 antibody for 24 hours in a humidified chamber at 4°C. After three washes with 0.1%Triton in PBS, secondary antibody (1:500 anti-rabbit IgG (H+L), F(ab')2 Fragment (Alexa Fluor® 488 Conjugate), catalog number 4412s, cell signaling technology; 1:500 anti-mouse (Alexa Fluor® 555), catalog number 19581S, cell signaling technology were used for 1 hr. After DAPI staining for 10min, the coverslips were transferred onto glass slides. Images were obtained using a Digital Microscope Camera Systems (Laica DM6000B).
2.2.6 Cell proliferation (Edu and Ki67) assays
To assess the cell proliferation, primary brain ECs were seeded in a 6-well plate with complete culture medium for 24 hours. After treatments, primary brain ECs proliferation was determined using Ki-67 Proliferation Assay[20] according to the manufacturer’s instructions. The bEnd3 cells proliferation was determined using Edu Proliferation Assay[21] according to the manufacturer’s instructions.
2.2.7 Scratch assay
Primary brain ECs were scratched with a P10 pipette tip in serum-free medium after transfected with YAP/TAZ shRNA lentivirus. Cells were photographed at 0, 16, and 24 h after the scratch. The cells were treated with hydroxyurea, an inhibitor of cell proliferation, for 4 hours before the migration assay. The bEnd3 cells were scratched with a P10 pipette tip in serum-free medium after transfected with TDP43 siRNA or TDP43-CTFS overexpression plasmid. Cells were photographed at 0 and 24 h after the scratch. Invaded area was measured by digital imaging using ImageJ software.
2.2.8 Animals
All animal procedures were approved by the Institutional Animal Care and Use Committees at University of Houston and they complied with pertinent NIH guidelines for care and use of animals. Both male and female mice were used in our study. Transient MCAO (tMCAO) in eighteen C57bl/6 mice: C57bl/6 mice from Charles river laboratories (Wilmington, MA, USA), kept under standardized light/dark (12 hours) and temperature (25°C) conditions, were anesthetized with isoflurane, and subjected to transient MCAO (tMCAO) for 1 hour as described previously [22]. Briefly, the skull was exposed for monitoring of local cerebral blood flow by Laser-Doppler flowmetry (Moor Instruments, Wilmington, DE, USA) with a probe at 1 mm posterior and 3 mm lateral to bregma. An incision was made in the midline of neck to expose the left carotid bifurcation and the external carotid artery (ECA), the occipital and superior thyroid arteries, and the internal carotid artery and pterygopalatine artery. Then a small incision was made in the ECA, and a 15 mm monofilament nylon suture with a heat-rounded at the tip (head diameter: 0.2–0.3 mm) (6-0, Harvard Apparatus) was inserted into ECA and was advanced towards the origin of the MCA (about 9mmfrom the carotid bifurcation) until a reduction in cortical cerebral blood flow (CBF) of the left MCA territory less than 25% of baseline. After one hour of occlusion, the suture was withdrawn to allow reperfusion. Animals were excluded from the experiment if the cerebral blood flow did not recover to at least 70% of baseline by 10 min post reperfusion. The brain was then removed 24 hours, 72 hours, and 1 week after induction of ischemia and coronal brain sections were prepared.
2.2.9 Histology
The mice were perfused with 50 ml of ice-cold 0.9% saline followed by 50 ml of 4% (w/v) paraformaldehyde in phosphate-buffered saline (PBS; pH 7.4). Their brains were removed and incubated overnight in 4% paraformaldehyde and then dehydrated in 20%–30% sucrose in PBS. Coronal brain slices (14 mm thick) from the right parietal cortex were sectioned with a frozen microtome (Leica) to produce consecutive frozen sections. For immunofluorescence staining, the sections were boiled in citric acid buffer (pH 6.0) for 5 min in a microwave oven. After the sections were cooled, they were treated with 0.3% Triton X-100 and 10% goat serum for 1 h at room temperature. The sections were then incubated overnight at 4°C with a primary antibody (1:200 anti-CD31 antibody, 1:300 anti- TDP43 antibody, 1:100 anti-TDP-43 (C-terminal) Polyclonal antibody, 1:100 anti- ZO-1 antibody, 1:100 anti- Claudin 5 antibody, 1:200 anti-Phospho-YAP antibody, 1:200 anti-YAP/TAZ antibody), and then incubated for 1 h at room temperature with a secondary antibody (1:500 anti-rabbit IgG (H+L), F(ab')2 Fragment (Alexa Fluor® 488 Conjugate), catalog number 4412s, cell signaling technology; 1:500 anti-mouse (Alexa Fluor® 555), catalog number 19581S, cell signaling technology) in PBS containing 10% blocking solution. The sections were mounted onto slides, stained with DAPI Solution with Antifade (Sigma-Aldrich), and covered with a coverslip.
2.2.10 Western blot analysis
Cells were scraped and lysed in RIPA lysis buffer on ice after treatment of 1 hours at 4°C for protein Extraction. In addition, NE-PER Nucleus and Cytoplasmic Extraction Reagents (78833, Thermo Scientific, Waltham, MA) to proceed cytoplasmic and nucleus protein extraction according to the manufacturer’s instructions. Protein was quantified using a BCA assay kit (Thermo Scientific, Waltham, MA) according to the manufacturer’s instructions. The cell lysates were solubilized in sodium dodecyl sulfate (SDS) sample buffer (40μg/lane) and separated by 10% SDS‐polyacrylamide gel electrophoresis (110 V for 75 min). After electrophoresis, the protein was transferred to polyvinylidene difluoride (PVDF) membranes. Then, the membranes were blocked with 3% bovine serum albumin (BSA) and incubated with primary antibodies overnight at 4°C, followed by a horseradish peroxidase–conjugated secondary antibody for 1 hours at room temperature, and detected with the enhanced chemiluminescence plus detection system (Millipore, Billerica, MA). The density of each band was quantified using Quantity One image‐analysis software (Hercules, CA).
3. Data and Statistical Analyses
ImageJ software (National Institutes of Health, Bethesda, MD, USA) was used to analyze the immunofluorescence results. The significance of differences in data sets was analyzed by two‐tailed Student’s t test or one‐way analysis of variance tests. The data are expressed as the mean ± SD and were analyzed using GraphPad Prism 6 software (GraphPad, La Jolla, CA, USA). The p value <0.05 was considered statistically significant.