2.1 Identification of active compounds and prediction of corresponding targets of Guizhi decoction. The active constituents of the five herbal medicines in GZD were acquired from the Traditional Chinese Medicine Systems Pharmacology database and Analysis Platform (TCMSP) (http://lsp.nwu.edu.cn/ tcmsp.php). This database provides comprehensive and accurate compound information, including the herbal ingredients’ chemical structural data, drug half-life, oral bioavailability (OB), intestinal epithelial permeability, and drug-likeness (DL).[15] According to the recommended drug screening criteria of the TCMSP database, chemical constituents with OB ≥30% and DL ≥0.18 may present ideal pharmacological activities, and they were selected as the active ingredients for further analysis. Subsequently, we screened the targets of active ingredients in GZD through the TCMSP database. The target names were imported into the UniProt database (http:// www.uniprot.org/) with the species selected as “Homo sapiens,” and the gene names of the targets were obtained from the UniProt database.
2.2 Identification of hypertension-related targets. “Hypertension” was the keyword used to extract the hypertension-related targets from the Online Mendelian Inheritance in Man (OMIM, https://omim.org/), Comparative Toxicogenomics Database (CTD, http://ctdbase.org/), Genecards (http://www.genecards.org/), and Drugbank (https://www.drugbank.ca/) databases. The disease-related targets obtained were standardized as gene names from the UniProt database with the species selected as “Homo sapiens.” A Venn diagram was drawn using an online website (http://bioinformatics.psb.ugent.be/Webtools/Venn/) to obtain the overlapping targets between the hypertension-related targets and active compound-related targets, which could be the potential targets of GZD in hypertension treatment.
2.3 Construction of protein-protein interaction network and screening of hub targets.
The Search Tool for the Retrieval of Interacting Genes (STRING) database (https://string-db.org/) can explore and analyze direct and indirect interactions between proteins.[16] Based on the overlapping targets of GZD and hypertension, we constructed the protein-protein interaction (PPI) network by using the STRING 11.0 database with the species limited to “Homo sapiens” and confidence score >0.7. The degree value was applied to choose the putative targets for molecular docking and experimental verification.
2.4 Gene ontology and pathway enrichment analyses. For better clarification of the potential biological processes and pathways of GZD in the treatment of hypertension in this study, we utilized the Database for Annotation Visualization and Integrated Discovery (DAVID, https://david.ncifcrf.gov/) to conduct gene ontology (GO) function enrichment analysis and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. The GO terms and pathway terms with p-value ≤0.05 were considered significant enrichment entries.
2.5 Network construction and analysis. In this study, several networks were established to visualize and analyze the complicated interconnection of compounds, targets, and disease using Cytoscape 3.7.1 software (https://cytoscape.org/; version 3.7.1). Based on the results, the compound-target (C-T) network, target-disease (T-D) network, compound-target-disease (C-T-D) network, and target-pathway (T-P) network were constructed using Cytoscape software. In these networks, nodes of different colors and shapes represented different active compounds, potential targets, or signal pathways, and the edges represented the connections between the nodes.
2.6 Molecular docking. The Surflex-Dock program in SYBYL 2.1 software (Certara Inc., USA) was applied to verify the network pharmacology screening results by docking the key targets with their active compounds and positive anti-hypertension drugs. The Surflex-Dock program is one of the most efficient ligand-receptor docking techniques and virtual screening programs with favorable features of high precision, high true-positive rate, and fast speed.[17] Common antihypertensive agents, valsartan, candesartan, captopril, enalapril, furosemide, metoprolol, nifedipine, amlodipine, bisoprolol, and hydrochlorothiazide were used as positive drugs for molecular docking. Seventeen key targets with degrees >30 in the PPI network were selected for docking simulation, and these targets were mapped to 80 active compounds for molecular docking. The three-dimensional structures of the active compounds were downloaded from the PubChem database (https://pubchem.ncbi.nlm. nih.gov/). The structures of the key target proteins were downloaded from the Protein Data Bank database (http://www.pdb. org/) and modified through the Surflex-Dock software.[18] The complex ligand and water molecules in protein receptors were removed, hydrogen atoms were added to the receptor, and amino acids were optimized and patched.[19] After molecular docking with the default parameters, the docking score values were generated for each compound docking with key targets. The docking score could be used to estimate the binding capacity between the targets and their active compounds.
2.7 Experimental animals and protocol. Six-week-old male, specific pathogen-free (SPF) grade Dahl salt-sensitive rats (body weight, 160-180 g) were provided by the Charles River Animal Laboratory (Beijing, China, Certificate No. 2016-0006). The rats were reared in the SPF room at a temperature of 20 ± 2℃ and 50 ± 10% humidity on a 12 h light/dark cycle. After acclimatization for 1 week, systolic blood pressure of all rats was measured weekly using a 12-channel tail-cuff blood pressure system (MRBP, IITC Life Science Instruments, USA). All experimental protocols used in this study were performed in accordance with the Institutional Animal Care and Use Committee of Shandong University of Traditional Chinese Medicine (Permit Number: SDVTCM2018071501).
2.8 Preparation of Guizhi decoction and intervention. The herbal medicines were supplied by the Affiliated Hospital of Shandong University of Traditional Chinese Medicine (Jinan, China) and verified by Prof. Feng Li. Cinnamomi ramulus, Paeoniae radix alba, and licorice were mixed in the standard ratio of 3:2:2, with reflux extraction of 10 times the volume of distilled water twice for 1 h each. The extracts were then mixed thoroughly, and concentrated to a relative density of 1.20-1.25 (70-80℃). The solution with 1.5 g/mL of the initial herb was applied in further experiments. After 1 week of acclimatization, the rats were randomly allocated to three groups (n = 8, each): NS group (normal-salt diet), HS group (high-salt diet), and GZD group. The NS group was fed low-salt (0.3% NaCl) diet throughout the experimental period. At 8 weeks of age, the HS group and GZD group fed with high-salt (8% NaCl) diet progressively developed hypertension. At 12 weeks of age, the NS and HS groups were fed with physiological saline at 2 mL/day, while 2 mL/4.0 g of GZD crude drug/kg/day was administered to the GZD group according to the results of a previous study.[9]
2.9 Collection of left ventricle tissue. At the end of the experiment, all the rats were anesthetized by intraperitoneal injection of 20 mg/kg pentobarbital sodium. The left ventricle of each rat was carefully isolated and cut into three parts. One part was fixed in 6% paraformaldehyde solution for morphological examination. The second part was fixed in 2.5% glutaraldehyde solution and observed under transmission electron microscope. The last part was placed in liquid nitrogen for western blot and quantitative real-time polymerase chain reaction (qRT- PCR).
2.10 Histological examination and transmission electron microscopy. The left ventricles were cut into 4-µm sized sections, and they were subjected to hematoxylin-eosin (H&E) staining or Masson staining to evaluate inflammatory cell infiltration or cardiac fibrosis, respectively.[10] Histological images of myocardium in rats were detected using ZEN 1.01.0 Imaging analysis software (Carl Zeiss Microscopy GmbH, German). Additionally, transmission electron microscopy was used to reveal the extent of myocardial damage.
2.11 Quantitative real-time polymerase chain reaction. In order to verify the reliability of network pharmacology analysis, qRT-PCR experiments were used to examine the mRNA expression levels of hub targets in the PPI network. Total RNA of the left ventricle was isolated using Trizol (Invitrogen, USA), and reverse transcription was performed with the PrimeScript RT reagent kit with gDNA Eraser (Takara, Japan) for 5 min at 85℃ according to the manufacturer’s instructions. The Light Cycler 480 SYBR Premix Ex Taq II (Roche, Germany) was used to perform qRT-PCR. The reaction conditions were 94℃ for 2 min, 94℃ for 30 s, and 60℃ for 30 s, and 40 cycles were performed in total. Each RNA sample was performed in triplicate, and the results were normalized with β-actin. The relative quantification analysis was performed by the 2-ΔΔCT method.
The sequences of the primers (synthesized by Accurate Biotechnology Co., Ltd) were designed as follows: IL-6: 5′-ATTGTATGAACAGCGATGATGCAC-3′/5′-CCAGGTAGAAACGGAACTCCAGA-3′; IL-1β: 5′-CCCTGAACTCAACTGTGAAATAGCA-3′/5′-CCCAAGTCAAGGGCTTGGAA-3′; CCL2: 5′-CTATGCAGGTCTCTGTCACGCTTC-3′/5′-CAGCCGACTCATTGGGATCA-3′; MMP-2: 5′-ACCTTGACCAGAACACCATCGAG-3′/5′-CAGGGTCCAGGTCAGGTGTGTA-3′; MMP-9: 5′-AGCCGGGAACGTATCTGGA-3′/5′-TGGAAACTCACACGCCAGAAG-3′; and β-actin: 5′-GGAGATTACTGCCCTGGCTCCTA-3′/5′-GACTCATCGTACTCCTGCTTGCTG-3′.
2.12 Western blot analysis. Western blot experiment was performed to assess the protein expression levels of the hub targets in the PPI network. The left ventricles were lysed by adding radioimmunoprecipitation assay lysis (RIPA) buffer (Cat. No. P0013B, Beyotime Biotechnology) and phenylmethylsulfonyl fluoride (PMSF, Cat. No. ST506, Beyotime Biotechnology). The protein concentration was measured using the bicinchoninic acid assay kit (Cat. No. P0010, Beyotime Biotechnology). Equal amounts of protein lysates were separated via appropriate concentration of sodium dodecyl sulfate-polyacrylamide gel electrophoresis (Cat. No. P0012A, Beyotime Biotechnology). The proteins were then transferred to the polyvinylidene difluoride membrane and cultured in 5% non-fat dry milk in Tris buffered saline-Tween 20 (TBST) buffer for 60 min at room temperature. Subsequently, the membranes were incubated with the CCL2 (Cat. No. ab25124, Abcam, 1:2000), IL-6 (Cat. No. ab9324, Abcam, 1:1000), IL-1β (Cat. No. ab205924, Abcam, 1:1000), MMP-2 (Cat. No. 10373-2-AP, Proteintech, 1:1000), MMP-9 (Cat. No. 10375-2-AP, Proteintech, 1:1000), and β-actin (Cat. No. ab8226, Abcam, 1:5000) overnight at 4℃. The membranes were rinsed five times in TBST, and then incubated with secondary antibodies for 1 h at room temperature. The protein bands were infiltrated with enhanced chemiluminescence, and they were visualized using the FluorChem Q 3.4 system (ProteinSimple, USA).
2.13 Statistical analysis. Data were expressed as mean ± standard deviation. The differences between groups were analyzed by one-way analysis of variance and independent t-tests using Statistical Package for the Social Sciences 21.0 software (SPSS, USA). A p-value <0.05 was considered statistically significant.