Bioinformatics analysis
Gene expression data of 515 primary LUAD samples and 59 paired normal lung samples were downloaded from The Cancer Genome Atlas (TCGA) (https://gdc-portal.nci.nih.gov/). Expression level of PLGF was compared by LUAD and normal samples by use of 3.34.7 limma package20 of R language. Overall survival time of patients with high and low PLGF expression was analyzed and compared by using Kaplan-Meier survival analysis and log-rank t test. Pathway enrichment analysis was carried out using gene set enrichment analysis software21.
Immunohistochemistry
Immunohistochemistry (IHC) was performed on purchased tissue microarrays at room temperature as described previously22. Briefly, paraffin-embedded tissue microarrays were blocked in 1% BSA (A8010, Solarbio, China) for 1 h. Subsequently, the tissue slices were incubated in specific primary antibodies against PLGF (ab196666, Abcam, Cambridge, UK) and β-catenin (ab16051, Abcam, Cambridge, UK) for 1 h, followed by incubation in HRP-labeled secondary antibodies (D-3004, Changdao, China) for 30 min. The tissue slices were stained with DAB (FL-6001, Changdao, China) for 5 min, and stained with hematoxylin (714094, BASO, Wuhan, China) for 3 min. Finally, the slices were examined on a microscope (ECLIPSE Ni, NIKON, Japan).
Cell culture and hypoxic treatment
RPMI-1640 medium (Hyclone, Logan, UT, US) was used to culture lung cancer cells (A549, H1975, H1650, H358, PC9) and human bronchial epithelial cell (16HBE). H1975 and H358 cells were cultured in a hypoxic chamber mixed with anaerobic gas (90% N2, 5% CO2) and 5% O2 (hypoxia treatment) or in an incubator of 5% CO2 and 95% air (normoxia treatment).
Quantitative real-time PCR (qRT-PCR)
According to the manufacturers’ instructions, briefly, RevertAid First Strand cDNA Synthesis Kit (Fermentas, USA) was applied to transcribe the RNA samples into cDNA through reverse transcription. SYBR Green qPCR Master Mixes (Thermo Fisher, USA) was applied to amplify the cDNA product. The primer sequences used for PLGF, HIF-1α and GAPDH were listed in Table 1.
Western blot analysis
The lysates were separated by electrophoresis and transferred onto a PVDF membrane.The membrane were then incubated with primary antibodies (1:1000) and second antibodies sequentially. The following antibodies were used, including Anti-PLGF (ab196666), anti-HIF-1α (ab51608), anti-C-myc(ab32072), anti-LDHA (ab125683), anti-Survivin (ab76424), anti-β-catenin (ab32572), anti-H3 (ab1791) from Abcam (Cambridge, UK), and anti-GAPDH (#5174) from Cell Signaling Technology (Beverly, MA, USA).
Plasmid construction
PLGF interference sequences (shown in Table 2) were cloned into the pLKO.1-puro plasmid to knockdown PLGF. The primers enclosing the cutting sites of EcoR I and BanH I were used to synthesize the coding sequence of PLGF (X54936.1) which was merge into pLVX-Puro to promote PLGF overexpression:
PLGF-F: 5’-CGGAATTCATGCCGGTCATGAGGCTG-3’ (EcoR I)
PLGF-R: 5’-CGGGATCCTTACCTCCGGGGAACAGC-3’ (BamH I ).
Cell transfection
An aliquot of 2 ml of suspension (1×106 cells/ml) was inoculated into 6-well plates for overnight culture. When 60-70% confluence was reached,lung cancer cells were transfected with shPLGF-1, shPLGF-2, shPLGF-3 (MOI=5, 5 µl) and shNC (MOI=5, 5 µl), or oePLGF (MOI=5, 5 µl)and empty plasmids (vector, MOI=5, 5 µl) using Lipofectamine 2000 reagent (Invitrogen, CA, USA). The cells incubated with medium served as a control.
Cell counting kit-8 assay
Cell counting kit-8 (CCK-8) assay was applied using a Cell Proliferation and Cytotoxicity Assay Kit (SAB,USA). Briefly, 100 ml cell suspension (2×103) of lung cancer cells (H1975, H358 or PC9) was added to each well of a 96-well plate, followed by different cell treatments. Eventually, 10 ml of CCK-8 solution was added to each well and optimal density (OD) at 450 nm was measured.
Cell mito stress test assay and Glycolysis stress test assay
Mitochondrial respiration experiments were conducted using the Mito Stress Test Kit and Glycolysis Stress Test Kit (Seahorse Bioscience, Billerica, MA, USA). OCR and ECAR were measured using a Seahorse the XF24 analyzer (Seahorse Bioscience, Billerica, MA, USA).
Cell mito stress test assay was performed as previously described23. Cells were seeded into 96-well cartridges and pre-equilibrated with the assay medium for 1 h. OCR was assayed under basal conditions followed by sequentially loading pre-warmed oligomycin, FCCP, rotenone & antimycin A into the sensor cartridge. ATP coupler oligomycin allows for measurement of oxygen consumption for ATP synthesis.Uncoupling FCCP reagent is used to measure maximal OCR level for evaluation of the spare respiratory capacity. Rotenone and antimycin A arrests mitochondrial respiration by prohibiting mitochondrial complexes Ⅰ and Ⅱ. Final concentrations of these reagents have been demonstrated in a previous study by Tan et al.9.
Glycolysis stress test assay was carried out following the vendor instructions (Seahorse Bioscience, Billerica, MA, USA). Briefly, cells were calibrated by the assay medium. Glucose, oligomycin and 2-deoxyglucose (2-DG) were then sequentially added in the assay medium. ECAR was detected under basal conditions and after separate treatments of glucose, oligomycin, and 2-DG. Glucose addition promotes glycolysis, oligomycin treatment suppresses oxidative phosphorylation and permits analysis of maximal cellular glycolytic capacity, and 2-DG treatment is used to inhibit glycolysis.
Stable cell lines and xenograft study
H1975 cells (6×106) infected with shPLGF-2 or shNC were injected into male nude mice (4-5 week old, Shanghai Laboratory Animal Company, Shanghai, China) subcutaneously. After measurement of tumor volume every three days,mice were sacrificed at 33 days. Tumor xenografts were collected, weighed and analyzed, followed by immunofluorescence (IF) microscopy for detection of anti-Ki-67 (ab23345, Abcam and hematoxylin-eosin (HE) staining. All animal experiments were performed following the ethics guidelines, and were approved by the ethnical committee.
IF microscopy
Briefly, tissue sections of tumor xenografts harvested from mice were incubated with anti-Ki-67 antibody (Abcam; 1:1000 dilution), Goat anti-Rabbit IgG (H+L) antibody (Beyotime Biotechnology; 1:500 dilution) before nuclei staining with DAPI (C1002, Beyotime Biotechnology; 1:500 dilution). A Laser scanning confocalmicroscope (Leica Microsystems Inc., USA) was used to observe the stained cells.
HE staining
Briefly, after embedding and fixingthe tissue sections (4-7 µm thickness) were immersed in xylene (Shanghai Sinopharm) and ethanol sequentially. Staining in hematoxylin solution lasted for 5 min and staining in eosin solution lasted for 1-2 min followed by alcohol dehydration. Eventually, a NIKON microscope (ECLIPSE Ni) and MS image analysis system (DS-Ri2, NIKON, Japan) were used to observe and analyze the tissue sections.
Statistical analysis
Data was present as mean ± SD. Statistical analysis was performed using GraphPad Prism software (version 7.0, USA), and each experiment was repeated at least three times. One-way analysis of variance (ANOVA) was applied for comparing mean values between different groups. p < 0.05 suggested significance.