Although biomagnification factor (BMF) is an important index of pollutants in food chains, its experimental determination is quite tedious. In this contribution, as the feature information, Tchebichef moments (TMs) were calculated directly from the molecular structural images, and then stepwise regression was employed to establish the prediction model of the logBMF. The proposed approach was applied to the logBMF prediction of organochlorine pollutants, and the correlation coefficient with leave-one-out cross-validation (Rcv) of the obtained model was 0.96, and the root mean square error (RMSEp) for the external independent test set was 0.21. Compared with traditional two-dimensional (2D) quantitative structure-property relationship (QSPR) as well as the reported method, the proposed approach was more simple, accurate and reliable. This study not only obtained the satisfactory prediction model for organochlorine pollutants, but also provided another effective approach to QSPR research.