Collection of Samples
All the isolates were obtained from the culture collection at Drug Microbiology Lab, Drug Radiation Research Department at (NCRRT), Cairo, Egypt. Garlic (Allium sativum) were purchased from local markets in Cairo, Egypt.
All the bacterial isolates were re-cultured on MacConkey and nutrient agar media. Then incubated at 37oC for 24 h. Their antimicrobial susceptibility were tested by the standard Kirby-Bauer disc diffusion method (17).
Pure colony from test organism was picked up with a sterile loop, suspended in nutrient broth and incubated at 37 °C for 2 hours. The turbidity of the suspension was adjusted to 0.5 McFarland’s standard. After that, 100 µl of broth were spread on the surface of nutrient agar. Nine antibiotics with different modes of actions were chosen to perform this test; amoxicillin (25 µg), cefotaxime (30 µg), cefoxitin (30 µg), chloramphenicol (30 µg), ciprofloxacin (5 µg), gentamicin (10 µg), ofloxacin (5 µg), tobramycin (10 µg) and tetracycline (30 µg). The inhibition zones were measured and interpreted according to National Committee for Clinical Laboratory Standards (NCCLS).
Fungal isolates were cultured on Sabouraud dextrose broth (SDB) at 22ºC - 25ºC for 24 hours. Test fungi in SDB were enumerated by using serial dilution method. Final cell concentration of culture was 104- 105 cfu/ml.
Sterile Sabouraud dextrose Agar (SDA) at 43-45ºC was prepared and poured into the Petri plates. Then the agar was allowed to solidify. 0.2 ml of fungal culture inoculum applied on each plate. Inoculum was evenly spread on agar using a glass L- rod spreader. The Petri dishes were left for one hour to allow agar surface to dry.
Antimicrobial discs were applied to the surface of the inoculated agar plate with sterile forceps and gently pressed down onto agar surface.The plates were incubated for 3-5 days at room temperature (22-25°C). The sizes of the zones of inhibition interpreted by referring to standardized chart.
Detection of biofilm production for highest resistant bacteria using Congo-red detection method
(18) described a simple qualitative method to detect biofilm production by using congo red agar (CRA) medium. Thirty-seven grams of brain heart infusion broth powder, 50g of sucrose and 15g of agar was dissolved in one liter of distilled water then autoclaved at 121°C for 15 minutes for sterilization. Eight grams of Congo red indicator powder was dissolved in one liter of distilled water then autoclaved at 121°C for 15 minutes. Then it was added to the autoclaved brain heart infusion agar with sucrose at 55°C. plates were inoculated and incubated aerobically at 37°C for 24 hours.
Isolates that produced black colonies with dry crystalline consistency were regarded as biofilm positive, while those showing pink colonies were biofilm negative. The experiment was performed in triplicate.
Green synthesis of silver nanoparticles using aqueous garlic (Allium sativum) extract based on sunlight irradiation (19)
For the reduction of silver ions, 25 ml of aqueous garlic extract (AGE) was added to 475 ml of 0.1 M AgNOȝ (8.5g AgNOȝ + 475ml deionized water) to give a stock solution of colloidal silver nanoparticles (AgNPs) with concentration of 100µg/ml. This reaction mixture was stirred properly and exposed to bright sunlight. Within minutes of exposure to the light the colorless solution started to change to yellow brown color indicating the formation of silver colloid. The color intensity increased with increasing time until reached after 15 minutes (Figure 1).
Characterization of green synthesized AgNPs:
- UV- visible spectral analysis:
Characterization of AgNPs was performed by UV-Visible spectrophotometer (JASCO V-560. UV-Vis. Spectrophotometer from 200-900 nm at a resolution of 1.0 nm using the control (negative) for autozero support.
- Transmission Electron Microscope (TEM):
The morphology (shape of nanoparticles) and size of AgNPs were notified by using TEM image (JEOL electron microscopy JEM-100 CX). Drop coating AgNPs produced TEM examinations onto carbon-coated TEM grids after drying by incubation at 37.0 ±2oC in an incubator.
- Dynamic Light Scattering (DLS):
Dynamic Light Scattering (DLS-PSS-NICOMPTm 380-ZLS particles sized system St. Barbara, California, USA) estimated average particle size of an incorporated AgNPs and size distribution. 200μl of AgNPs carried to a disposable little cuvette. Following equilibration to a temperature of 25.0 ±2oC for 2.0 min., five measures were implemented.
- X-Ray Diffraction (XRD):
X-Ray Diffraction analysis was adjusted with the XRD-6000 lists, including outstanding austenite quantitation, crystallinity estimation, stress examination, and crystallite size/lattice strain matters. The investigation of extended X-ray diffraction models (Shimadzu apparatus) was employed Cu-Kα target, and nickel filter (Shimadzu Scientific Instruments; SSI, Japan). Working by a Cu anode at 50.0 mA and 40.0 Kv in the state of 2θ value inside 20° and 100° with a flow of 2°/min.; the intensity of the diffracted X- rays estimated as a function of the diffracted angle 2θ (20).
- Fourier Transform Infra-Red Spectroscopy (FTIR):
FT-IR investigation was a helpful method that provides information regarding chemical functional groups remaining in the AGE. The measures were carried out following a JASCO FT-IR 3600 Infrared spectrometer by working KBr Pellet purpose. It was recorded at a resolution of 4.0cm-1 in a wave number range of 400- 4000 cm-1.
Antimicrobial activity of green synthesized AgNPs compared with tetracycline, nystatin and AGE against selected isolates.
Two fold serial dilutions of colloidal AgNPs were prepared from stock concentration (100µg/ml) using deionized water. Fresh bacterial suspension were adjusted to 0.5 McFarland’s standard and swabbed over MHA. Sterilized Whattman no.1 filter papers, 6 mm in diameter were loaded with 10 µl of (100, 50, 25, 12.5 and 6.25 µg/ml) of synthesized colloidal AgNPs, 500mg/ml of aqueous garlic extract (AGE) also was loaded. In addition, disc of tetracycline 30 µg (TE) were used for bacterial isolates and nystatin 100 µg/m for fungal isolates to compare their influence on the sensitivity of the tested isolates. All plates were incubated at 37°C for 24 hours, followed by the measurement of the diameters of the inhibition zones.
Morphology and biofilm production of bacterial and fungal isolates before and after treatment using (TEM):
In order to obtain an electron micrograph of a bacterial and fungal specimen, the later must be subjected to a series steps, including fixation, dehydration embedding, sectioning and staining. Ultrathin sections were picked up on carbon grids and viewed on (JEOL-JEM 1010) Transmission Electron Microscope, Japan. Located at the Regional Centre for Mycology and Biotechnology- Al-Azhar University, Cairo, Egypt.
Statistical analysis
Recorded data were analyzed using the statistical package for social sciences, version 20.0 (SPSS Inc., Chicago, Illinois, USA). Quantitative data were expressed as mean± standard deviation (SD). Qualitative data were expressed as frequency and percentage. Different statistical steps were done. First, ANOVA used when comparing between more than two means. Then, LSD was used for multiple comparisons between different variables. Finally, the confidence interval was set to 95% and the margin of error accepted was set to 5%. So, the p-value was considered highly significant (<0.001), significant (<0.05) and insignificant (>0.05).