Identification of antimicrobial peptide
Third instar larvae of the armyworm Mythimna separata were ground in liquid nitrogen and total RNA was extracted for transcriptome sequencing. The known AMP gene sequence was selected to align the transcriptome sequence using MegAlign software. The primers were designed based on the armyworm gene acquired by sequence alignment (sense primer: 5′-TTTGAATTAAGAACAAT-3′; antisense primer: 5′-CTATTTTCCTAAAGCTT-3′). The gene was amplified by PCR using the above primers with Premix LA Taq (Takara, Dalian, China) according to the manufacturer’s instructions. The PCR conditions were as follows: denaturation at 94 °C for 4 min, 36 cycles of denaturation at 94 °C for 40 s, annealing at 57 °C for 35 s, and elongation at 68 °C for 25 s, and a final elongation at 68 °C for 8 min. The PCR-amplified products were cloned into the pMD18-T vector (Takara) and positive plasmids were sequenced.
Multi-sequence alignment of cecropins from different insects
The amino acid sequence of the AC-1 precursor was derived from the nucleotide sequence and subjected to multi-sequence alignment with the respective cecropins of different insects from the protein database at the National Center for Biotechnology Information (NCBI, https://www.ncbi.nlm.nih.gov/protein/?term=cecropin) using Vector NTI Advance® 11.5.3 software.
Physicochemical characteristics and structure prediction of AC-1
The physicochemical characteristics of AC-1 were predicted by the ExPASy Bioinformatics Resource Portal (http://www.expasy.org/tools/) and its secondary structure was predicted using a novel online computational framework PEP-FOLD3.5 (http://bioserv.rpbs.univ-paris-diderot.fr/services/PEP-FOLD3/) [20]. The secondary structural components of AC-1 were calculated using an online SOPMA secondary structure prediction method (https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=
npsa_sopma.html).
We further analyze the secondary structure of AC-1 by examining its CD spectrum, (0.2 mg/mL) in 20 mM PBS (pH7.4) using a CD spectrometer (Chirascan, Applied Photophysics Limited, United Kingdom). The CD spectrum of AC-1 was recorded between 190 and 260 nm at 1 nm intervals at room temperature, with a 0.5 s response time and 1.0 nm step size.
Hemolytic and cytotoxic activities of AC-1
AC-1 (purity>98%) was synthesized by Shanghai Gil Biochemical Co., Ltd., China, purified by reverse high-performance liquid chromatography (Figure S1), and detected by mass spectrometry (Figure S2). Its hemolytic activity was tested using blood drawn from chickens and treated with sodium citrate anticoagulant. The treated blood was centrifuged at 3000×g for 10 min and washed three times in PBS. The red blood cells were counted and diluted to 2×107/mL, and 100 μL of red blood cell suspension was mixed with 100 μL of different concentrations of AC-1 (final concentrations 50, 100, 200, 300, 400, and 500 μg/mL). Triton X-100 solution was as a positive control and PBS as a negative control. After incubation for 1 h at 37 °C, the mixture was centrifuged at 3000 ×g for 10 min and the absorbance of the supernatants was then detected at 405 nm (OD405). The hemolysis ratio was calculated by the formula: hemolysis ratio=(A405peptide-A405PBS)/(A405Triton-A405PBS)×100%. Each experiment was repeated three times.
The cytotoxicity of AC-1 was evaluated using a CCK-8 cell counting kit (Vazyme, Nanjing, China) in ST cells as described previously, with minor modifications [21]. A total of 100 μL of cells (about 5×104 /mL) per well was added into 96-well cell-culture plates and incubated for 24 h at 37 °C. Different concentrations of AC-1 (final concentrations 100, 200, 300, 400, and 500 μg/mL) were added to the cells with further incubation for 12 h at 37 °C, followed by the addition of 10 μL of CCK-8 reagent into each well. The cell-culture plates were incubated for 1 h at 37 °C and the absorbance was determined at 450 nm using an automatic microplate reader. Each experiment was repeated three times.
Antimicrobial assay of AC-1
The antimicrobial activity of AC-1 was analyzed by determining the MIC against different bacteria, as described previously, with minor modifications [22]. Ampicillin was used as a positive control. The synthesized AC-1 was dissolved in PBS and added into 96-well microtiter plates at two-fold dilutions. All the bacterial strains were cultured in Luria-Bertani (LB) broth at 37 °C to exponential phase. The bacterial solutions were diluted to 2×106 colony forming units (CFUs)/mL and added to 96-well microtiter plates at 50 μL per well, followed by 100 μL of AC-1/bacteria solution with mixing, and incubated for 16 h at 37 °C. Resazurin (10 μL 6 mM) was then added to each well and incubated for a further 3 h and the color change was observed in each well. Ampicillin and kanamycin were used as positive controls and PBS and LB broth as negative controls. The MIC was recorded as the concentration of the peptide in the last well that remained blue.
Thermal- and salt-resistant stabilities of AC-1
We evaluated the thermal- and salt-resistant stabilities of AC-1 by determining the antimicrobial activities of AC-1 against Salmonella according to the inhibition zone method. To assess its thermal-resistant stability, 1mg/mL AC-1 was incubated for 1h at 4, 20, 40, 60, 80, and100°C, respectively. To determine its salt-resistant stability, 1 mg/mL AC-1 was incubated for 1 h with 0, 50, 100, 150, 200, and 250mM of NaCl, KCl, and MgCl2, respectively. Salmonella was cultured to exponential phase in LB broth at 37 °C and diluted to 2×109 CFUs/mL. Diluted bacterial solution (100 μL) was then mixed with 100 mL of sterilized LB solid medium and poured into a sterile culture dish. After cooling, the culture dish was punched using a diameter-same hole punch. The treated AC-1 solution was added into each well. Ampicillin was used as a positive control and PBS as a negative control. The culture dishes were incubated at 37 °C for 12 h and the diameters of the inhibition zones were measured using Vernier calipers. Each experiment was carried out in triplicate.
Time killing curve of AC-1 against E. coli
Time killing curve of AC-1 against E. coli was determined as described previously [23]. E. coli in logarithmic growth phase were centrifuged to collect the precipitate, diluted with sterile LB liquid medium to 2×107 CFU/mL, followed by the addition and mixing of 400 μL of bacterial solution and 400 μL of AC-1 solution to final concentrations of AC-1 of 1 MIC and 4 MIC, respectively. NaCl solution was used as negative control. The mixed solution was incubated at37 °C for 0, 10, 20, 30, 40, 50, 60 min, respectively, and then centrifuged to collect the bacteria. The bacterial precipitate was washed and suspended in PBS, and 50 µL of bacterial solution was serially diluted 10 times. Each dilution of bacterial solution (100 µL) was spread on LB plates and cultured for 14 h, and the number of bacteria was then calculated. Each experiment was carried out in triplicate.
TEM
E. coli in logarithmic growth phase were centrifuged to collect the precipitate. The precipitate was washed three times with sterile PBS and diluted with sterile PBS to 2×107 CFU/mL, and 600 µL of bacterial solution and 600 µL of AC-1 solution were thoroughly mixed, to give a final concentration of AC-1 of 4 MIC. The mixed was incubated in a water bath at 37 °C for 1 h. E. coli treated with NaCl solution was used as a negative control. The two groups of E. coli were fixed, dehydrated, and stained, as described previously [24], and examined by TEM (HT7700; Hitachi, Japan).
Expression of AC-1 in E. coli
The recombinant AC-1 gene included 39 amino acid residues of the mature peptide AC-1 and the enterokinase cleavage site at 5′-terminus of AC-1 gene. AC-1 gene was synthesized and cloned into pET-32a(+) using the restriction enzymes Kpn I and Hind III. The recombinant plasmid pET-32a(+)-AC-1 was transformed into E. coli BL21 (DE3) to express recombinant AC-1 by isopropyl-β-D-thiogalactoside induction. The resulting recombinant protein was purified using a Ni-NTA gravity column as described previous [25], and then digested using enterokinase. The digested solution was passed through a Ni-NTA gravity column, and the flowthrough was collected, dialysed, and concentrated to obtain AC-1 as described previous [25].
Statistical analysis
Data were analyzed using GraphPad Prism 6 software. A value of p < 0.05 was considered significant and p < 0.01 was considered highly significant.