2.1 Differentially expressed genes (DEGs) screening
The gene expression profile was obtained from GSE114206 dataset of GEO database, which contained 6 EOC samples with low PARP and platinum-resistant and 6 EOC samples with high PARP and platinum-sensitive We use the “limma” R package to screen the DEGs between the platinum- resistant and sensitive samples. The adjusted P-value < 0.05 and |log2fold change (FC)| > 1, were chosen as the cut-off threshold. The candidate genes were visualized by “circos” package (https://www.omicstudio.cn/tool).
2.2 Patients and clinical sample collection
All the ovarian cancer tissues and serum samples were obtained from patients who were diagnosed and undergone surgery in the First Affiliated Hospital with Nanjing Medical University between January 2010 to January 2019. Surgically resected specimens were immediately flash-frozen in RNA latter (AM7020, Invitrogen, USA) at −80°C for nucleic acid and protein extraction was performed. In the present study, 15 platinum-sensitive EOC samples and 9 platinum-resistant EOC samples were collected to investigate the molecular expression. Meanwhile, blood samples of 6 platinum-resistant and 9 platinum-sensitive EOC patients were collected to detect levels of chemokine in serum. All patients signed informed consent before using clinical specimens, and the use of specimens for this study has been proved by the ethics committee of the First Affiliated Hospital with Nanjing Medical University.
2.2. Cell culture and chemicals
The platinum-sensitive EOC cell line HO8910, A2780 and the resistant cell lines A2780-DDP, HO8910-DDP, which construed by exposure to increasing concentration of cisplatin, were used for research. Cells were cultured in RPMI1640 (C11875500BT, Gibco, USA) containing 10% FBS (FB25015, CLRAK Bioscience, USA) and 1% penicillin/streptomycin (Sigma-Aldrich) at 37℃ supplied with 5% CO2.
2.3 Plasmid and siRNA interference
The plasmid encoding transcript of CXCL-2 was designed and synthesized by Tsingke (Nanjing, China). The siRNA targeted CXCL-2 and the negative control (NC) were purchased from GemmaPharma (Shanghai, China). Plasmid and siRNA transfected cells by Lipofectamine 3000 Transfection Reagent (L3000150, Invitrogen, USA) as manufacturer’s instructions. Cells were treated with the indicated agents for analyses 24 or 48 hours after transfection. The CXCL-2 siRNA sequence was described in previous study 22.
2.4 Cell viability assay
Preprocessed EOC cells were plated at a density of 6000-8000 cells per well in 96-well plates. A series of cisplatin (P4394, Sigma-Aldrich, USA) concentrations (0, 5, 10, 15 and 20μM) were added. After 48 hours treating, cell viability was qualified by Cell Counting Kit-8 (CCK8) assay (A31102, Vazyme, China). Absorbance was measured at 450 nm on a microplate reader (TECAN, Infinite M200 PRO, Switzerland), and IC50 were analyzed in Graphpad 8.0. The recombinant human CXCL-2 (ab268433, Abcam, USA), CXCL-2 neutralizing antibody (ab89324, Abcam, USA) and IgG antibodies (ab188776, Abcam, USA) as control were used to regulate CXCL-2 level in supernatant of cell culture. The inhibitor of CXCR2, SB225002 (MedChemExpress, USA) and the inhibitor of CHK1, SAR-020106 (Selleck Chemicals, USA) were also used in cell viability assay.
2.5 RNA extraction and quantitative Real-time PCR (qRT-PCR)
The total RNA of cultured cells and EOC tissues was extracted with Trizol (15596026, Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. cDNA HiScript Q RT SuperMix for qRT-PCR (R323, Vazyme, China) to prepare cDNA. qRT-PCR was performed with an SYBR Green PCR Kit (Q311, Vazyme, China). The sequences of gene primers used for qRT-PCR were synthesized by Tsingke (Nanjing, China) and showed in Supplementary Table 1. The amplification was performed as the manufacturer’s instructions. The RNA expression level was normalized to GAPDH to calculate the relative gene expression.
2.5 Western blot assay
The total protein of cultured cells and tissues were lysed in RIPA buffer (P0013B, Beyotime, China) with protease inhibitor (P1005, Beyotime, China). Western blot assays were performed by protocol as we previously reported 23. The antibodies used for western blot assay contained anti-human CXCL-2 (ab89324, Abcam, USA), anti-human NANOG (ab21624, Abcam, USA), anti-human SOX2 (ab218520, Abcam, USA), anti-human OCT4 (ab200834, Abcam, USA), anti-human ATR (ab2905, Abcam, USA), and anti-human CHK1 (ab133277, Abcam, USA). In addition, anti-human β-actin and anti-human GAPDH were used as control.
2.6 Enzyme-linked immunosorbent assay
Platinum-resistant and platinum-sensitive patient's serum and cell culture supernatants were respectively extracted for cytokine analysis. Human CXCL-2 enzyme-linked immunosorbent assay (ELISA) kits, purchased from Hengyuan Biological Co. Ltd (H-10236, Shanghai, China) were used for analysis as the manufacturers’ instructions. Each sample was duplicated.
2.7 Cell apoptosis assay
For the apoptosis assay, EOC cells were plated in 6-well plates and pretreated. After 48 hours cisplatin treating, 2× 104 cells and the cultural supernatant were collected. For cell staining, 5 μl of FITC Annexin V and 5 μl of propidium iodide (BD Biopharmingen, NJ, USA) were added to the collected cells and suspending in 300 μl of binding buffer for 15 min in dark. Cell apoptosis were eventually detected by a flow cytometer (FACScan; BD Biosciences, USA) using Cell Quest software (BD Biosciences, USA).
2.8 Statistical analysis
Each sample was analyzed based on results that were repeated at least three times and analyzed in Graphpad 8.0. The statistical significance of differences between two groups was determined by a standard Student’s t-test.In all cases, differences at p < 0.05 were regarded as statistically significant (*), ones at p < 0.01(**) , p < 0.001(***) or p<0.0001(****) was considered higher statistical significances.