1.1 Cells and reagents
Human hepatoma cells (HepG2, Huh7) and human normal liver (LO2) were purchased from the Liver Cancer Institute of Shanghai Zhongshan Hospital and stored in Biomics Biotechnologies (Nantong) Co., Ltd. DMEM medium and fetal bovine serum (FBS) were purchased from Gibco; Trizol, RNA reverse transcription kit and LipofectamineTM2000 were purchased from Invitrogen; SYBR Green real-time quantification kit was purchased from Roche; rabbit anti- Fascin1 antibody, rabbit anti-hepatocyte growth factor (HGF), rabbit anti-fibronectin (FN), rabbit anti-matrix metalloproteinases (MMP7)antibody, rabbit anti-B-actin antibody, goat anti-rabbit IgG-HRP, and Goat anti- Rabbit IgG- TRITC all purchased from Proteintech. MTT staining solution was purchased from Nanjing Shengxing Biological Company; Transwell chamber was purchased from Corning Company; siRNA and Real-time PCR primers were synthesized by Biomics Biotechnologies Co., Ltd.
1.2 Methods
1.2.1 Construction and screening of siRNA targeting fascin1 gene
siRNAs targeting fascin 1 gene (si-fascin) including four si-fascin sequences (Fascin_siR1, Fascin_siR2, Fascin_siR3, and Fascin_siR4) and one non-specific sequence siRNA (si-NC) were designed according to the guideline proposed by Tuschl from GenBank. The sequences of above siRNAs were shown in Table 1. Among four si-fascin sequences, the most effective one in down-regulating target genes was screened out for subsequent experiments.
Table 1
siRNA sequence
siRNA ID
|
Sequence (5'-3')
|
Fascin_siR1
|
S
|
GCAAGUUUGUGACCUCCAAdTdT
|
|
As
|
UUGGAGGUCACAAACUUGCdTdT
|
Fascin_siR2
|
S
|
GAUCGACCGCGACACCAAAdTdT
|
|
As
|
UUUGGUGUCGCGGUCGAUCdTdT
|
Fascin_siR3
|
S
|
CGUUCGGGUUCAAGGUGAAdTdT
|
|
As
|
UUCACCUUGAACCCGAACGdTdT
|
Fascin_siR4
|
S
|
AGUUCUGCGACUAUAACAAdTdT
|
|
As
|
UUGUUAUAGUCGCAGAACUdTdT
|
Si-NC
|
S
|
UUCUCCGAACGUGUCACGUdTdT
|
|
As
|
ACGUGACACGUUCGGAGAAdTdT
|
1.2.2 Cells transfection and grouping
The experimental cells were stored in Biomics Biotechnologies (Nantong) Co., Ltd. The cells were grown in DMEM medium containing 10% FBS and routinely cultured in a humidified incubator at 37°C with 5% CO2. The density of logarithmic growth cells as adjusted to 1×106 cells/mL, and the cells were seeded in a 24-well plate (1 ml per well). SiRNAs was respectively transfected into HepG2 and Huh7 cells according to the instructions of LipofectamineTM2000 (In each well, appropriate amount of siRNA was add to 50 μL Opti-MEM, then mixed gently. The final concentration of siRNA is 100 nM).
The experiment groups: si-fascin transfected group(si_fascin), si-NC transfected group (si_NC) and untreated group. The latter two groups served as experimental control groups.
1.2.3 Real-time quantitative PCR (RT-qPCR)
Transfected cells and untreated cells at logarithmic growth phase were collected by centrifugation. The total RNA was extracted separately with Trizol reagent and reversely transcribed into cDNA. RT-qPCR amplification was performed according to the instructions of the SYBR Green Real-Time Quantitative Kit. The cycle parameters of PCR amplification were 95℃ for 20sec, 55℃ for 30sec, 72℃ for 30sec, which repeated 45 cycles. The 2-△△Ct value method [20] was used to calculate the relative expression of the target gene. Relative messenger RNA levels were normalized to housekeeping gene GAPDH (glyceraldehyde-3-phosphate dehydrogenase) from the same sample. The primer sequences were shown in Table 2. All samples were run in triplicate. RT-PCR primers were synthesized by Biomics Biotechnologies Co., Ltd.
Table 2
The primer sequences and length
Primer
|
|
Sequence (5'-3')
|
length(bp)
|
Fascin
|
F
|
CCTACAACATCAAAGACT
|
186 bp
|
|
R
|
CAGAACTCGAAGAAGAAG
|
GAPDH
|
F
|
GAAGGTGAAGGTCGGAGTC
|
226 bp
|
|
R
|
GAAGATGGTGATGGGATTTC
|
|
1.2.4 Western blotting
The cells were inoculated into 6-well plates and cultured in 37℃ and 5% CO2 incubator for 24 hours. When the fusion degree was 70% ~ 80%, the cells were harvested and lysed with SDS Lysis Buffer, extracted total protein and determined protein concentration by BCA method. After the protein lysate was electrophoretic with SDS-PAGE (5% laminating gel, 8% separating gel) and transferring for 2 h at 200 mA constant Flow using a wet transfer instrument, the proteins in the gels were transferred onto the PVDF membrane. After blocked for 2 hours at room temperature with TBS blocking solution containing 5% skimmed milk powder, the PVDF membrane was incubated at 37°C for 2 hours with primary antibody, including fascin 1 (1:2000), HGF (1:2000), FN (1:2000), and MMP7 (1:2000), then added the secondary antibody (1:1000) and incubated at 37°C for 2 h. Finally, the cleaned membrane was developed by electrochemiluminescence (ECL) method. Result analysis: the internal reference gene β-actin (1:1000) was used as an internal control, the gray value of the target band was analyzed by Image J software. The relative expression of the target gene is equal to the ratio of the gray value of the target band to the gray value of the internal reference of the same sample.
1.2.5 Immunofluorescence Staining
The growth phase cells were collected and plated for 24 hours. When the fusion degree reached 50% ~ 60%, the cells were fixed with 4% paraformaldehyde for 30 min, and treated with 0.5% Triton membrane for 15 min, blocked with 1% BSA solution for 30 min, and incubated with a primary fascin 1 antibody (1:50 diluted) at 4°C overnight, then added goat anti- rabbit IgG-TRITC antibody (1:50 diluted) for 30 min at room temperature. The cells were counter-stained with 1 μg/mL Hoechst in the dark, incubated at room temperature for 10 min, mounted with anti-fluorescence quenching mounting solution, observed under a fluorescent microscope, and captured image.
1.2.6 MTT detection
In each group, the cells at logarithmic growth phase were harvested by centrifugation, plated in 4 parallel wells of 96-well plate at 5×104 cells/mL (100 µl /well). Then, 10 μL MTT was added to each well and store at 37°C in the dark for 4 hours, followed by 150 μL/well of DMSO at 37°C for 10 min. After pipetting and mixing, 120 µL was taken out and transferred to another clean 96-well plate, and 120 µl DMSO was taken as a blank control to zero. Then the OD value was measured at 0 h, 24 h, 48 h, 72 h and 96 h after transfection on the microplate reader with a wavelength of 490 nm, and cell proliferation curve was drawn with time as the horizontal axis and OD value as the vertical axis.
1.2.7 Transwell experiment
The logarithmic growth phase cells were taken to inoculate in 24-well plates, 100μL and 600 μL DMEM complete medium were added to the upper and lower chambers of the Transwell chamber, respectively, then incubated overnight at 37°C with 5% CO2. After 48 h of transfection, the cells were resuspended in DMEM basal medium and the cell density was adjusted to 1×106/mL. After 24 h, the medium in the upper and lower chambers was aspirated and discarded. The cells in the upper chamber were gently wiped with a cotton swab. After washing with PBS, the cells were fixed with 10% methanol for 30 sec. The lower chamber was immersed in 0.2% crystal violet solution for 5 min. The membrane of the small chamber was cut off along the edge, and the cells that passed through the membrane and moved to the lower chamber were counted under an inverted microscope, and each membrane was counted with 5 different fields (×250) and photographed.
1.2.8 Preparation of electron microscope samples
The sterilized small round slides were placed in 24-well plates, and cells were respectively seeded on slides, and transfection was performed when the cell climbing density reaches about 60%, then added 2.5% glutaraldehyde and fixed at 4℃ for 24 h. The preparation of electron microscope samples was assisted by the Electron Microscope Room of Nantong University.
1.3 Statistical analysis
Each group of experiments should be repeated at least 3 times. All data are expressed as mean±SD, and GraphPad Prism 8 software was used for statistical analysis. The comparison between groups of samples used t test. Differences were considered statistically significant when P<0.05.