Synthesis of the designed compounds
Liquid chromatography-mass spectrometry (LCMS) spectra were registered on an LCMS IT-TOF (Shimadzu, Japan) with an electrospray ionization (ESI) source in the positive ion mode. 1H-NMR spectra were acquired on a Bruker Avance III spectrometer at 500 MHz. The NMR data were processed and analyzed by TopSpin (Bruker, USA). Chemical shifts were expressed at δ value to the internal standard (TMS). IR spectra were measured on an IF S66 spectrometer (Bruker, USA) in KBr pellets at an absorption range of 400–4000 cm-1. Thin layer chromatography (TLC) was performed on Merck Kieselgel 60 F254 aluminum plates and visualized with UV and iodine.
Each compound was synthesized in two stages: condensation of the appropriately substituted benzaldehydes and acetophenones, and reaction with hydrazine hydrate to yield chalcone-derived pyrazoles.
General procedure for the synthesis of chalcones
First, 10 mmol of the appropriately substituted benzaldehyde and acetophenone were dissolved in 20 ml of ethanol. The mixture was then stirred at 5°C for few minutes. Next, 10 ml of 40% aqueous KOH was added, and the solution was stirred at room temperature (RT) for approximately 4 h. The formed precipitate was collected by filtration, characterized by HPLC and LCMS, and subjected to further reaction.
General procedure for the synthesis of chalcone-derived pyrazoles
Hydrazine hydrate (20 mmol) was added to a solution of chalcone (5 mmol) in acetic acid (10 ml). The reaction mixture was refluxed for approximately 2 h. The progress of the reaction was monitored by TLC. After the completion of the reaction, the mixture was cooled, adjusted to pH 7 with 10% Na2CO3, poured into crushed ice, and allowed to stand overnight at RT. The product was collected by filtration and purified by flash chromatography or reversed-phase high-performance liquid chromatography (RP-HPLC). The product was then characterized by LCMS, 1H-NMR, and IR.
1-[3-(6-methoxy-2H-1,3-benzodioxol-5-yl)-5-(4-methoxyphenyl)-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one (PCH-1): ESI-MS: (m/z): 369.139 [M+H]+; 1H-NMR (CDCl3, 500 MHz), δ (ppm): 2.39 (s, 3H), 3.30 (dd, J1=3.77 Hz, J2=3.77 Hz, 2H), 3.78 (s, 3H), 3.79 (s, 3H), 5.49 (dd, J1=3.23 Hz, J2=3.41 Hz, 1H), 6.00 (s, 2H), 6.54 (s, 1H), 6.85 (d, J=8.26 Hz, 2H), 7.19 (d, J=7.89 Hz, 2H), 7.48 (s, 1H); IR (KBr), ν (cm-1): 1650.92, 1468.94
1-[5-(2H-1,3-benzodioxol-5-yl)-3-(3,4,5-trimethoxyphenyl)-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one (PCH-2): ESI-MS: (m/z): 399.125 [M+H]+; 1H-NMR (CDCl3, 500 MHz), δ (ppm): 2.45 (s, 3H), 3.14 (dd, J1=4.31 Hz, J2=4.30 Hz, 1H), 3.73 (dd, J1=11.84 Hz, J2=11.85 Hz, 1H), 3.91 (s, 3H), 3.93 (s, 6H), 5.54 (dd, J1=4.31 Hz, J2=4.66 Hz, 1H), 5.94 (s, 2H), 6.73 (m, 3H), 6.97 (s, 2H); IR (KBr), ν (cm-1): 1665.00, 1417.26
1-[5-(2H-1,3-benzodioxol-5-yl)-3-(4-methylphenyl)-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one (PCH-3): ESI-MS: (m/z): 323.098 [M+H]+; 1H-NMR (CDCl3, 500 MHz), δ (ppm): 2.42 (s, 3H), 2.44 (s, 3H), 3.15 (d, J=16.59 Hz, 1H), 3.73 (dd, J1=10.78 Hz, J2=11.19 Hz, 1H), 5.52 (d, J=7.05 Hz, 1H), 5.94 (s, 2H), 6.70 (s, 1H), 6.75 (s, 2H), 7.25 (d, J=7.46 Hz, 2H), 7.65 (d, J=7.88 Hz, 2H); IR (KBr), ν (cm-1): 1649.10, 1443.97
1-[5-(2H-1,3-benzodioxol-5-yl)-3-(2-methoxyphenyl)-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one (PCH-4): ESI-MS: (m/z): 339.101 [M+H]+; 1H-NMR (CDCl3, 500 MHz), δ (ppm): 2.42 (s, 3H), 3.31 (dd, J1=4.27 Hz, J2=4.60 Hz, 1H), 3.85 (s, 3H), 3.86 (dd, J1=11.50 Hz, J2=11.83 Hz, 1H), 5.47 (dd, J1=4.60 Hz, J2=4.60 Hz, 1H), 5.93 (s, 2H), 6.73 (s, 1H), 6.76 (s, 2H), 6.96 (d, J=8.21 Hz, 1H), 7.04 (t, J1=7.56 Hz, J2=7.32 Hz, 1H), 7.41 (m, 1H), 7.94 (dd, J1=1.64 Hz, J2=1.81 Hz, 1H); IR (KBr), ν (cm-1): 1659.49, 1419.84
1-[3,5-bis(2H-1,3-benzodioxol-5-yl)-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one (PCH-5): ESI-MS: (m/z): 353.068 [M+H]+; 1H-NMR (CDCl3, 500 MHz), δ (ppm): 2.42 (s, 3H), 3.09 (dd, J1=4.61 Hz, J2=4.23 Hz, 1H), 3.68 (dd, J1=11.53 Hz, J2=11.53 Hz, 1H), 5.51 (dd, J1=4.62 Hz, J2=4.23 Hz, 1H), 5.94 (s, 2H), 6.05 (s, 2H), 6.69 (s, 1H), 6.76 (m, 2H), 6.85 (d, J=8.57 Hz, 1H), 7.11 (dd, J1=1.54 Hz, J2=1.54 Hz, 1H), 7.39 (d, J=1.53 Hz, 1H); IR (KBr), ν (cm-1): 1653.92, 1458.82
1-{5-(2H-1,3-benzodioxol-5-yl)-3-[4-(trifluoromethoxy)phenyl]-4,5-dihydro-1H-pyrazol-1-yl}ethan-1-one (PCH-6): ESI-MS: (m/z): 393.056 [M+H]+; 1H-NMR (CDCl3, 500 MHz), δ (ppm): 2.44 (s, 3H), 3.14 (dd, J1=4.40 Hz, J2=4.83 Hz, 1H), 3.73 (dd, J1=11.86 Hz, J2=11.86 Hz, 1H), 5.55 (dd, J1=4.40 Hz, J2=4.39 Hz, 1H), 5.94 (s, 2H), 6.73 (m, 3H), 7.29 (d, J=8.95 Hz, 2H), 7.79 (d, J=8.63 Hz, 2H); IR (KBr), ν (cm-1): 1652.13, 1447.62
1-[5-(2,3-dihydro-1-benzofuran-5-yl)-3-(4-methoxyphenyl)-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one (PCH-7): ESI-MS: (m/z): 337.108 [M+H]+; 1H-NMR (CDCl3, 500 MHz), δ (ppm): 2.43 (s, 3H), 3.16 (m, 3H), 3.71 (dd, J1=11.79 Hz, J2=11.79 Hz, 1H), 3.88 (s, 3H), 4.55 (t, J1=8.84 Hz, J2=8.42 Hz, 2H), 5.53 (dd, J1=4.42 Hz, J2=4.21 Hz, 1H), 6.73 (d, J=8.00 Hz, 1H), 6.96 (d, J=8.85 Hz, 2H), 7.01 (dd, J1=1.47 Hz, J2=1.48 Hz, 1H), 7.07 (s, 3H), 7.72 (d, J=8.85 Hz, 2H); IR (KBr), ν (cm-1): 1661.06, 1493.03
1-[5-(6-methoxy-2H-1,3-benzodioxol-5-yl)-3-(4-methoxyphenyl)-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one (PCH-8): ESI-MS: (m/z): 369.092 [M+H]+; 1H-NMR (CDCl3, 500 MHz), δ (ppm): 2.46 (s, 3H), 2.98 (dd, J1=4.40 Hz, J2=4.41 Hz, 1H), 3.67 (dd, J1=11.64 Hz, J2=11.63 Hz, 1H), 3.82 (s, 3H), 3.86 (s, 3H), 5.77 (dd, J1=4.40 Hz, J2=4.41 Hz, 1H), 5.88 (s, 2H), 6.54 (d, J=5.66 Hz, 2H), 6.93 (d, J=8.80 Hz, 2H), 7.68 (d, J=8.80 Hz, 2H); IR (KBr), ν (cm-1): 1661.13, 1483.86
1-[5-(4-hydroxyphenyl)-3-(6-methoxy-2H-1,3-benzoxathiol-5-yl)-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one (PCH-9): ESI-MS: (m/z): 371.045 [M+H]+; 1H-NMR (CDCl3, 500 MHz), δ (ppm): 2.32 (s, 3H), 3.18 (dd, J1=4.33 Hz, J2=4.33 Hz, 1H), 3.69 (s, 3H), 3.73 (dd, J1=7.11 Hz, J2=8.39 Hz, 1H), 5.37 (dd, J1=4.33 Hz, J2=4.33 Hz, 1H), 5.67 (s, 2H), 6.42 (s, 1H), 6.55 (d, J=8.66 Hz, 2H), 6.94 (d, J=8.66 Hz, 2H), 7.69 (s, 1H); IR (KBr), ν (cm-1): 1638.59, 1468.15
Biological evaluation
Cell culture
HEK293, A-549, H226, and H460 cells were obtained from the American Type Culture Collection (ATCC, USA) and cultured in DMEM (HEK293) or RPMI medium (Corning) supplemented with 10% fetal bovine serum (Corning), 2 mM L-glutamine (Sigma-Aldrich), and antibiotics (penicillin 62.6 µg/ml and streptomycin 40 µg/ml, Sigma-Aldrich). The cells were incubated in a humidified 5% CO2 atmosphere at 37 ˚C and routinely screened for Mycoplasma contamination.
Cell viability assay
The cell viability assay was performed for A-549, H226, H460, and HEK293 cells after treatment with the test compounds by using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT, Sigma-Aldrich) assay. Briefly, cells were seeded onto 96-well culture plates for attachment. After 24 h, triplicate wells were treated with DMSO (1%) and the agents. After 72 h of incubation at 37 °C in 5% CO2, the MTT solution (0.4 mg/ml) was added to each well. After 2–4 h of incubation, the medium was removed, and the formazan crystals were dissolved in 100 μl of DMSO. The absorption was measured at 450 nm with an ASYS UVM340 microplate reader (Biochrom Ltd.). The 50% inhibitory concentration (IC50) was defined as the concentration that reduced the absorbance of the DMSO-treated wells by 50% of the vehicle. The IC50 values were generated from GraphPad Prism 9 software by plotting the survival curve as a function of dose from 3 independent experiments.
Colony formation assay
Cells were seeded onto 6-well plates (500 cells/well) and allowed to attach for 24 h in a fresh RPMI medium. Next, the cells were pretreated with DMSO (1%) solution of the examined compound (at the concentrations of 1, 5, and 10 µM) for 24 h. The medium containing compound was then changed, and the cells were cultured for additional 9 days. After incubation, the cells were washed twice with phosphate-buffered saline (PBS), fixed with 100% methanol for 30 min, and stained with 0.5% crystal violet for 15 min. The colonies were photographed and counted by ImageJ software.
Morphology assessment
Cells were seeded onto tissue culture plates with a glass slide and allowed to attach for 24 h. Next, the cells were treated for the indicated time with PCH-1 or DMSO. After incubation, the cells were rinsed with PBS, fixed in 3.7% paraformaldehyde (Sigma-Aldrich) for 10 min at RT and stained with 4′,6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich). The stained nuclei were visualized using a fluorescence microscope (Olympus BX60) with an appropriate filter.
Analysis of cell cycle distribution
Cells were seeded onto tissue culture plates and allowed to attach for 24 h. Unsynchronized cells were treated with PCH-1 or Etoposide at IC90 concentration for 24 and 48 h, while synchronized cells were treated with PCH-1 or Etoposide at IC90 concentration for 2, 4, 6, 8, and 10 h. Synchronization of the cells was performed as described previously by G. Chen et al.66. Next, the cells were trypsinized, fixed in ice-cold 75% ethanol, and stored overnight at −20°C. After centrifugation, the cells were rinsed with PBS and stained with 20 μg/μl PI (Sigma-Aldrich) and 50 μg/μl RNaseA (Thermo Fisher) in PBS for 30 min at RT. The distribution of the cells in different phases of the cell cycle was determined by flow cytometry (Guava EasyCyte 8 cell sorter, Merck Millipore) and FlowJo software v10. Each experiment was repeated independently three times.
HTS-Tubulin Polymerization Assay Biochem Kit
The assay was performed according to the manufacturer’s instructions. Briefly, compounds were diluted in DMSO to a concentration of 2 mM and then in GTB buffer to a concentration of 50 µM. In the wells of a 96-well plate (UV transparent, half surface wells) previously heated to 37 °C, 10 µl of dilutions of the test compounds were placed in duplicate. The plate was incubated for 2 min at 37 °C, and 100 µl of freshly prepared tubulin solution (4 mg/ml) in GTB-GTP buffer was then added. The plate was immediately placed in a Tecan SPARK 10M plate reader, and the reaction kinetics were measured with the following settings: absorbance reading: 340 nm, 37 °C, interval: 45 s, number of cycles: 160.
Immunofluorescence
Cells were seeded onto tissue culture plates with a glass slide and allowed to attach for 24 h. After the incubation period, the cells were washed in PBS, fixed for 15 min at RT with 4% paraformaldehyde (Sigma-Aldrich) in PBS, and permeabilized for 15 min in 0.25% Triton-X100 (Sigma-Aldrich) in PBS. The cells were then washed twice with PBS, blocked with 3% bovine serum albumin (BSA, Sigma-Aldrich) in PBS for 1 h at RT, and incubated for 1 h at 37 °C in a humidified chamber with the following primary antibodies diluted in 3% BSA in PBS-T (PBS with 0.1% (v/v) Triton X-100): rabbit anti-Aurora B antibody (Abcam, ab2254) 1:500 and mouse anti-Tubulin 1:200 (Sigma-Aldrich, T8328). The slides were washed three times with PBS-T and incubated for 1 h at 37 °C in a humidified chamber with the following secondary antibodies diluted in 3% BSA in PBS-T: goat anti-mouse IgG antibody conjugated with Fluorochrome DyLight-488 (1:250, Thermo Fisher) and goat anti-rabbit IgG antibody conjugated to Alexa Fluor 594 (1:200, Jackson ImmunoResearch). The slides were then washed twice in PBS-T and stained with 0.25 µg/ml DAPI. Images were acquired with an LSM 800 inverted laser scanning confocal microscope (Carl Zeiss) with an Airyscan detector using a ×63 1.4 NA Plan Apochromat objective (Carl Zeiss).
Apoptosis and caspase 3/7 assay
Cells were seeded onto tissue culture plates and allowed to attach for 24 h. Next, the cells were treated with PCH-1 or Etoposide at IC90 concentration for 6, 24, and 48 h. After incubation, the cells were harvested by trypsinization, rinsed twice with PBS, and stained with fluorescein isothiocyanate (FITC) - Annexin V, Alexa Fluor™ 488 conjugate (Thermo Fisher, #A13201) for apoptosis assay and with CellEvent™ Caspase-3/7 Green Flow Cytometry Assay Kit (Thermo Fisher, #C10427) for caspase-3/7 activation according to the manufacturer’s protocols. The analysis was performed with Guava EasyCyte 8 cell sorter (Merck Millipore) and FlowJo software v10. Each experiment was repeated independently three times.
Western blot
Cells (1.5 × 106) were cultured in tissue culture plates for overnight attachment. The cells were then incubated with IC90 of PCH-1 or 1% DMSO for 6, 24, and 48 h. Subsequently, the cells were collected and lysed in Laemmli buffer with a protease inhibitor cocktail (Roche) and phosphatase inhibitors (NaF (5 mM), β-glycerophosphate (5 mM), and Na3VO4 (1 mM)). The cells were then sonicated in triplicate (10 s, 30% amplitude) and centrifuged at 16,000 × g at 12°C for 15 min. Protein concentrations were determined using the DC Protein Assay Kit (Bio-Rad). For determining total protein content, the cellular extract was separated by 10% or 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a microporous polyvinylidene difluoride (PVDF) membrane (Bio-Rad). After blocking with 5% (w/v) BSA (Sigma-Aldrich) in 1x TBST (pH 7.4 and 0.1% Tween-20) for 1 h, the membranes were incubated overnight with primary antibodies at 4 °C, followed by horseradish peroxidase-conjugated secondary antibodies for 1 h. All the used antibodies are listed in Table S1 in Supplementary Information. The immunoreactive signals were detected using an enhanced chemiluminescence (ECL) detection reagent kit (Thermo Fisher) and a ChemiDoc XRS+ Imaging System (Bio-Rad). The band intensity was measured using Image Lab 5.2 software (Bio-Rad).
Wound healing migration assay
To analyze cell motility, A-549 cells were seeded onto the Ibidi-silicone insert on a cover glass-bottom 24-well plate for live cell imaging and incubated for 24 h. Subsequently, the inserts were dislodged, the cellular debris was removed by washing with RPMI, and the cells were incubated with different concentrations of PCH-1 in an imaging chamber (cellVivo incubation system, Olympus) at 37 °C with 5% CO2. Images were captured every 10 min for 42 h under × 10 magnification using a fluorescence microscope (IX83 Inverted Microscope, Olympus) connected to an XC50 digital color camera (Olympus). The percentage of wound closure was quantified with ImageJ software.