Antibody and Inhibitor
Commercial TAZ antibodies were purchased from Abcam. p38, p-p38, caspase 3 antibodies and c-caspase 3 were purchased from Cell Signaling. Actin and Flag antibodies were obtained from Sigma. PH-797804, a p38 inhibitor, was purchased from Selleck.
Cell Culture
All cell lines were cultured in an atmosphere of 5% CO2 at 37 °C. T24 and 5637 cells were cultured in RPMI-1640 (Invitrogen) supplemented with 10% FBS (Thermo Scientific), penicillin (100 U/ml) and streptomycin (100 mg/ml). 293T cells were cultured in DMEM (Invitrogen) supplemented with 10% FBS (Thermo Scientific), penicillin (100 U/ml) and streptomycin (100 mg/ml).
Plasmids and Lentiviruses Production
The constructs for shCtrl and shTAZ expression in T24 and 5637 cells were prepared by cloning to negative control shRNA and TAZ shRNA sequences into a pLKO.1-puro lentiviral vector (Addgene #8453) in line with the manufacturer's protocol. The sequence of the control shRNA was: CCTATTTATGAGGCGACGGAA, and that of shTAZ was: AGAGGTACTTCCTCAATCA. For the stable over-expression of TAZ protein, TAZ cDNA was subcloned from a pEF-TAZ-N-Flag construct (Addgene #19025) to pBABE-hygro (Addgene #1765).
ShRNA-expressing lentiviruses were generated as follows. Briefy, for the construction of lentiviral shRNA-expressing vectors, 293T packaging cells were transfected by 6 µg of each construct through lipofectamine reagents (Life Technologies, Grand Island, NY, USA). The lentivirus-containing supernatants were harvested 72 h after the transfection, and the lentiviruses with titers exceeding 1 × 107 CFU/ml were used for infection.
Transfection
On the day before the transduction, 3.5 × 105 cells were cultured in 500 µl of cell growth medium, which was placed on 24-well plates. The cells should exhibit a 50–70% confluence during transduction. The culture medium was replaced with a medium-containing polybrene and lentiviral particles, with the final concentration of polybrene reaching 8 µg/ml. Then, the cells were incubated overnight before the lentivirus/polybrene mixture was replaced with fresh culture medium.
RNA Extraction, Reverse Transcription (RT) and Quantitative Real-time PCR Analysis
The cultures were harvested in Trizol (Invitrogen) for total RNA extraction, while the contaminated DNA was removed by DNase treatment. Total RNA was reversely transcribed into a complementary DNA through ReverTra Ace Qpcr RT Master Mix with gDNA removers (TOYOBO). The complementary DNA was then diluted and applied for quantification through real-time PCR, which was performed using SYBR Green Realtime PCR Master Mix (TOYOBO) and the Quantastudio3 Real-time PCR System (Applied Biosystems). The experiment was performed for at least twice, with duplicate biological replicates. PCR oligo sequences were purchased from Sangon Biotech: GAPDH (forward: AGCCACATCGCTCAGACAC; reverse: GCCCAATACGACCAAATCC), TAZ (forward: GGCTGGGAGATGACCTTCAC; reverse: CTGAGTGGGGTGGTTCTGCT), CTGF (forward: CCAATGACAACGCCTCCTG; reverse: TGGTGCAGCCAGAAAGCTC), CYR61 (forward: AGCCTCGCATCCTATACAACC; reverse: TTCTTTCACAAGGCGGCACTC), ANKRD1 (forward: CACTTCTAGCCCACCCTGTGA; reverse: CCACAGGTTCCGTAATGATTT), p38 (forward: CGTGTTGCAGATCCAGACCA; reverse: GCCAGAATGCAGCCTACAGA).
Cell Proliferation and Viability Assay
The T24 and 5637 cells infected with the virus carrying shCtrl or shTAZ vector were cultured in a 96well plate (2,000 cells/well), whose number was measured on a daily basis by a Cell Counting Kit8 (CCK8) assay (Dojindo Molecular Technologies, Inc., Kumamoto, Japan) for 2 days. T24 and 5637 cells were cultured in 24-well plates. Cell growth was measured by means of an EdU incorporation assay in accordance with the product protocol. Briefly, T24 and 5637 cells were cultured in RPMI-1640 for 2 hours with EdU labeling. Then, the cells were fixed, permeated and stained by EdU solution. Cell nuclei were labeled by Hoechst 33342 (RiboBio, Guangzhou, China). Lastly, the treated cells were observed in a laser scanning microscope before being treated with PH-797840 (30 µM) for 2 hours for subsequent cell proliferation and viability assay.
Statistical Analysis
Statistical analyses were performed using SPSS 21.0 (IBM SPSS, Armonk, NY, USA). P < 0.05 was considered to indicate a statistical difference, and P < 0.001 was considered to indicate a statistically significant difference.