Animals
C57BL/6 mice were obtained from the animal facility, Ulm University, Germany. Mice were used as D-50 (Week-8 as young) or >2years for old until otherwise noted. Cdc42GAP-/- mice were obtained from the animal facility at CCHMC, Ohio, USA. Animals were housed and handled in accordance with the IACUC at CCHMC and the Regierungspräsidium Tübingen permission numbers 0.165, 1172 and 1296 respectively.
Reagents
The antibodies to cdc42, Numb goat polyclonal antibody, PAR6 and Tubulin were obtained from Abcam. The Alexa Fluor 488 (Donkey Anti-Rabbit and Anti-Rat IgG H&L) were also obtained from Abcam. The APC-alpha-6Itg anti human/mouse CD49f was obtained from BioLegendR, Biotin anti-mouse Sca-1 (Ly-6 A/E) antibody (Clone D7) was obtained from eBioscience. Cy3R (Donkey Anti-Rabbit and Anti-Goat IgG H&L was obtained from Abcam). Dynabeads Sheep anti-rat igG was obtained from Invitrogen, life technologies. FcR block anti mouse CD16/CD32 and PE cy7 antibody was obtained from eBiosciences. PE-CD34 Rat anti-mouse CD34 was obtained by BD Pharmigen. Streptavidin-PEcy7 was obtained from eBioscience. Sytox blue was obtained from ThermoFisher Scientific.
Determination of the size of anagen area
Black patches onto the mice skin are considered to be in anagen 7. To measure the percentage of mouse back skin with anagen area, mice skin was shaved and photographed. The percentage of area of mouse back skin with black spots was calculated with Imaging processing and quantification software (Adobe Potoshop) using a square of 4 cm2 area as control for intensity.
Paraffin sections and H&E staining
For paraffin section mouse back skin was fixed in 4% formalin solution overnight at 40C and was embedded in the paraffin. Paraffin embedded skin section were cut into 5-µM-thick sections and used for the staining with H&E and IF staining. For H&E staining paraffin section were deparaffinized and then rehydrated and stained with hematoxylin and eosin.
FACS analyses and isolation of HFSC
FACS isolation of HFSC was performed using published protocols 44,45. Briefly back skin of the mice was cut with scissors and kept in ice cold PBS. With the help of scalpel subcutaneous fat was removed and skin was kept in Dispase solution (4µg/ml), dermal side down and incubated overnight at 40C. Epidermis was peeled out and treated with trypsin (.025%) in HBSS for 10 min at 370C to get a single cell suspension. The stem cell fraction was enriched by magnetic depletion using biotinylated Sca-1Ab and the Dynabead system. After magnetic depletion cells were stained with anti-alpha-6 integrin (Biolegends, clone GoH3) and anti-CD34 (clone RAM) (eBioscience).
Colony formation assay
Colony formation assay was performed on sorted HFSCs (Sca-1-/lowA-6highCD34+). For this 10,000 HFSC were plated in lethally irradiated 3T3 feeder cells in Ca-Mg-Free FAD basal medium containing EGF, Insulin, hydrocortisone supplemented with Ca-free FBS for 14 days and medium was changed every second day. On day 14 cells feeder layer was removed with Trypsine:Versene (1:5) solution followed by fixing in 4%PFA for 20 min and staining in 1% of Rhodamine and 1% of Nile blue in water45.
Immunofluorescence staining of paraffin sections
Paraffin section was used for immunofluorescence staining of CD34(1:200), Wnt5a (1:100) and active Cdc42(1:50),(EMD Millipore)46. Antigen retrieval was performed for both the antigen by boiling the paraffin sections after deparaffinization in Dako target retrieval buffer for 20 minutes (Dako, Carpentaria, CA, USA). Sections were blocked for nonspecific binding in BSA in PBS containing 10% goat serum. Primary Ab incubation was performed for overnight at 40C followed by fluorescence conjugated secondary antibody incubation. DAPI was used to counterstain the nucleus. Stained samples were analyzed on a fluorescence or a confocal microscope.
Immunofluorescence staining of sorted HFSC for polarity analysis
Freshly sorted HFSC were seeded on fibronectin coated glass coverslips. For polarity analysis, HFSC were incubated for 2 hrs with 300 ng/ml Wnt5a and 10µM CASIN or left untreated. After incubation at 370C, 5% C02 and 3% O2 in growth factor free medium, cells were fixed with BD Cytofix Fixation Buffer (BD Biosciences). After fixation cells were gently washed with PBS and permeabilized with 0.2% TritronX-100 (Sigma) in PBS for 20 min and blocked with 10% donkey serum for 30 min. Primary Ab incubation followed with secondary antibody incubation were performed at room temperature for 1hrs. The coverslip was mounted with ProLong Gold Antifade reagent with DAPI (Invitrogen, Molecular Probes). Cells were stained with an anti-Cdc42 (Millipore, rabbit polyclonal), an anti-ß-catenin (Millipore, rabbit polyclonal), Par6 (Santa Cruz Biotechnology, goat polyclonal), Tubulin (rat, monoclonal), followed by incubation with secondary antibodies conjugated with Alexa fluor 488 and Cy-5. Samples were imaged with an AxioObserver Z1 microscope (Zeiss) with a X63 objective. Images were analyzed with Axio Vision 4.6 software. Polarity scoring was performed based on the localization of each single stained protein, if it was asymmetrically distributed with respect to a plane through middle of the cell. Alternatively, samples were analyzed with LSM710 confocal microscope (Zeiss) equipped with a X63 objective. Primary raw data were imported into the Velocity Software package (Version 6.0, Perkin Elmer) for further processing and conversion into three-dimensional images. Analysis of the localization analysis of ß-catenin was performed using velocity software (percentage of ß-catenin intensity in the nucleus above the threshold level).
G-LISA
For the determination of active GTP bound form of Cdc42 we used the G-LISA kit for Cdc42 from Cytoskeleton according to the protocol of the manufacturer.
Reverse-transcriptase real time PCR
20,000-40,000 HFSC from young and aged mice were lysed and processed for RNA extraction immediately after sorting or after treatment of CASIN and Wnt-5a for 2hrs. RNA was obtained with microRNA extraction kit(Qiagen) and whole RNA was used for cDNA preparation. cDNA was prepared and amplified with Ovation RNA amplification system V2 (Nugen). All real-time PCR reaction was performed using Taqman real time PCR reagent and primers from Applied Biosystem on an ABI9700HT real time PCR machine.
Western blot
For the measurement of protein expression, western blot was performed on Sca-1-/low keratinocyte or in keratinocyte cell lysate from back skin of young and old mice for Cdc42 using anti-Cdc42 (Millipore, rabbit polyclonal) antibody and was normalized with the actin blot using the Actin (Sigma) antibody. The relative level of expression was estimated by densitometry quantification.
Lentivirus mediated knockdown of Wnt5a
Aged mice (24-month-old) were killed; Sca1-low cells were isolated from the back-skin area as previously described. These cells were further transduced overnight on retronectin-coated (TaKaRa) plates with cell-free supernatants containing lentiviral particles according to reference19,47. The lentivirus plasmid vector pLKO 1-YFP was obtained from Sigma's validated genome-wide TRC shRNA libraries (Sigma- Aldrich) and was further changed to eGFP in-house.
Statistical analysis
A minimum 3 and up to 6-7 replicates was done for experiments presented. Data are presented as mean and standard error means (SEM). Comparison between groups has been done using Student’s t-test assuming two tailed distribution and unequal variances. Differences were considered statistically significant at the p<0.05 level.